Browse Element(s) Details


Os.8110.1.S1_at

Description gb:AK070050.1
DB_XREF= gi:32980074
TID=Os.8110.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040I08, full insert sequence.
FL= gb:AK070050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1440010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14349NANA3+7784513..7788872retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14370Os.27683.2.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14370OsAffx.3240.1.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14390OsAffx.12858.1.S1_at11/113+7807082..7808351hypothetical protein
LOC_Os03g14400Os.8110.1.S1_at10/113+7810937..7812796Cytochrome P450 family protein, expressed
LOC_Os03g14410Os.52789.1.S1_at1/113+7813588..7817890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14420Os.15637.1.S1_s_at11/113+7819865..7822224Cytochrome P450 family protein, expressed
LOC_Os03g14430OsAffx.12859.1.S1_at11/113+7822702..7823350hypothetical protein
LOC_Os03g14440OsAffx.3241.1.S1_at11/113+7823964..7824437hypothetical protein
LOC_Os03g14450Os.10756.1.S1_at11/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.57462.1.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.2232.3.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8110.1.S1_at--947--2171Chr03:7811500..7811524 (25 bp)
ACACAGGTTGGTGGCTACACGGTGC
LOC_Os03g14400
Os.8110.1.S1_at--1105--5631Chr03:7811431..7811455 (25 bp)
GACAGCAAGGTGTGGTCTGACCCTG
LOC_Os03g14400
Os.8110.1.S1_at--12--8591Chr03:7811419..7811443 (25 bp)
TGGTCTGACCCTGACAAGTTCATGC
LOC_Os03g14400
Os.8110.1.S1_at--333--10671Chr03:7811386..7811410 (25 bp)
TTCCTGCAGAGCGAGGTGGACCTGC
LOC_Os03g14400
Os.8110.1.S1_at--73--7551Chr03:7811361..7811385 (25 bp)
GTGGCCGTGACTTCGAACTGATTCC
LOC_Os03g14400
Os.8110.1.S1_at--565--8491Chr03:7811333..7811357 (25 bp)
TGGCTCTGGTCGAAGGATCTGTCCG
LOC_Os03g14400
Os.8110.1.S1_at--535--711Chr03:7811188..7811212 (25 bp)
ATGATACTAGAGTTGGCTACGCCAC
LOC_Os03g14400
Os.8110.1.S1_at--546--3331Chr03:7811166..7811190 (25 bp)
CACTCCGGGCTGTTGCTATACCAGT
LOC_Os03g14400
Os.8110.1.S1_at--382--4751NONE
GCTGATCATCACCATATGCTACATT
NONE
Os.8110.1.S1_at--1116--4811Chr03:7811109..7811133 (25 bp)
GCTACATACAATCCGTTATCTTTAG
LOC_Os03g14400
Os.8110.1.S1_at--1091--8191Chr03:7811085..7811109 (25 bp)
GGAATGGAACACTTCACTGGTAAAT
LOC_Os03g14400
Target Sequence 
ACACAGGTTGGTGGCTACACGGTGCCCAAGGGCACNCCGTGTTCTGGTGAATGTTTGGGCGATTGGTCGGGACAGCAAGG
TGTGGTCTGACCCTGACAAGTTCATGCCGGAGAGGTTCCTGCAGAGCGAGGTGGACCTGCGTGGCCGTGACTTCGAACTG
ATTCCATTTGGCTCTGGTCGAAGGATCTGTCCGGGGTTGCCGCTGGCTGTTCGCATGGTGNACCTGATGCTCGCGTCGTT
GCTGCACCGGTTTGAGTGGAGGCTTCTACCGGAGGTCGAGAAGAACGGGGTGGACATGGCGGAGAAGTTCGGGATGATAC
TAGAGTTGGCTACGCCACTCCGGGCTGTTGCTATACCAGTTTAATAAGCTGATCATCACCATATGCTACATTGCTACATA
CAATCCGTTATCTTTAGGAATGGAACACTTCACTGGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis