Browse Element(s) Details


Os.8114.3.S1_at

Description gb:AK066848.1
DB_XREF= gi:32976866
TID=Os.8114.3
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, partial cds, clone: 23C4AG056
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079N02, full insert sequence.
FL= gb:AK066848.1 gb:AK103581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0307011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed
LOC_Os07g03080NANA7+1170993..1171614hypothetical protein
LOC_Os07g03090OsAffx.16058.1.S1_at11/117+1174993..1176406F-box domain containing protein
LOC_Os07g03100Os.53088.1.S1_at11/117+1178544..1181268F-box domain containing protein, expressed
LOC_Os07g03110Os.11532.1.S1_at11/117+1181579..1183965F-box domain containing protein, expressed
LOC_Os07g03120OsAffx.16059.1.S1_at11/117+1192708..1193390expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8114.3.S1_at--739--611Chr07:1167360..1167384 (25 bp)
ATGCTACTGACACAATGCCAGCGGC
LOC_Os07g03070
Os.8114.3.S1_at--1109--1611Chr07:1167379..1167403 (25 bp)
AGCGGCTGCTTCTTTCAATTCTTCT
LOC_Os07g03070
Os.8114.3.S1_at--159--3191Chr07:1167394..1167418 (25 bp)
CAATTCTTCTTCACAGATGGCTGGA
LOC_Os07g03070
Os.8114.3.S1_at--576--6231Chr07:1167409..1167433 (25 bp)
GATGGCTGGATCAAGCAACGGCTTT
LOC_Os07g03070
Os.8114.3.S1_at--655--2571Chr07:1167425..1167449 (25 bp)
AACGGCTTTGATTCGTCAACTCTGT
LOC_Os07g03070
Os.8114.3.S1_at--580--9711Chr07:1167440..1167464 (25 bp)
TCAACTCTGTCTACGGCAGCTACAA
LOC_Os07g03070
Os.8114.3.S1_at--290--3851Chr07:1167567..1167591 (25 bp)
CTGCAGCTGATTCGCTCTCAGTAAA
LOC_Os07g03070
Os.8114.3.S1_at--564--7791Chr07:1167701..1167725 (25 bp)
GGTGCCAAAATCCTGTCTTGCTTAA
LOC_Os07g03070
Os.8114.3.S1_at--601--7671Chr07:1167769..1167793 (25 bp)
GGGATTGCATGAACCTTTTACCTTT
LOC_Os07g03070
Os.8114.3.S1_at--559--10451Chr07:1167786..1167810 (25 bp)
TTACCTTTTCAGAGCTCAAACCGTG
LOC_Os07g03070
Os.8114.3.S1_at--712--9471Chr07:1167878..1167902 (25 bp)
TCTGATCATAGTATTTCCCCGTTTG
LOC_Os07g03070
Target Sequence 
ATGCTACTGACACAATGCCAGCGGCTGCTTCTTTCAATTCTTCTTCACAGATGGCTGGATCAAGCAACGGCTTTGATTCG
TCAACTCTGTCTACGGCAGCTACAACCGGAAGTACTGGAAGCACTGTAACCGATCTTGGGGTTGTTGGTAGAGGTATCAA
ACGTGCTAATATCAAGCCAATCTCTGCTGAACCTCCTCCCAAGAGAGCTGCAGCTGATTCGCTCTCAGTAAAAGGTGATA
GCAGCAACAACTCAGATGTTCATACCCCAGCACAAGAGGGCGATGATTCTGTATCAAAGTAATGCATTTTACCCTAGGTA
GTAACTTAATGGAATCTATTCGGTGCCAAAATCCTGTCTTGCTTAATATGTACTGCTGCATGTCCATTTTCTCAGAAGAA
CTGCCAATAGGGATTGCATGAACCTTTTACCTTTTCAGAGCTCAAACCGTGTNTTAAATTGATGGTTGACTTGATTGTNN
AGNGAGTTCATGGTGGACTNCCATCCAACTCAATTGTATCTGATCATAGTATTTCCCCGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8114.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis