Browse Element(s) Details


Os.8274.1.S1_at

Description gb:AK073545.1
DB_XREF= gi:32983568
TID=Os.8274.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041K02, full insert sequence.
FL= gb:AK073545.1 gb:AK109426.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0473010/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04670Os.37769.1.S1_at11/119+2488844..2492529expressed protein
LOC_Os09g04680Os.26592.1.S1_s_at11/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_s_at8/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.3.S1_x_at6/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_x_at4/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04690OsAffx.6175.1.S1_at11/119+2496167..2496809hypothetical protein
LOC_Os09g04700OsAffx.17569.1.S1_at11/119+2499021..2499313hypothetical protein
LOC_Os09g04710Os.20237.1.S1_at10/119+2500675..2503379GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04720Os.53719.1.S1_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_s_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_at1/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04730Os.8274.1.S1_at10/119+2511446..2516209oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g04740OsAffx.22947.1.S1_x_at8/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.2.S1_x_at5/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.3.S1_x_at4/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.5.S1_x_at2/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04750NANA9+2532705..2533927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04760OsAffx.17571.1.S1_at11/119+2534378..2534764hypothetical protein
LOC_Os09g04770OsAffx.6176.1.S1_at11/119+2538390..2539148hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009688biological_processabscisic acid biosynthesis
GO:0010182biological_processsugar mediated signaling
GO:0005829cellular_componentcytosol
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8274.1.S1_at--795--4731Chr09:2514109..2514133 (25 bp)
GCTGTTACAAAAACTGCCCTGCTTG
LOC_Os09g04730
Os.8274.1.S1_at--1035--9051NONE
TGCTTGGTCTCACAAAGGCTCTTGC
NONE
Os.8274.1.S1_at--843--1991Chr09:2513131..2513155 (25 bp)
ACTCGTGTTAACTGTATAGCCCCTG
LOC_Os09g04730
Os.8274.1.S1_at--764--10171Chr09:2513117..2513141 (25 bp)
TATAGCCCCTGGTTTTGTTCCTACA
LOC_Os09g04730
Os.8274.1.S1_at--491--9851Chr09:2513096..2513120 (25 bp)
TACAAATTTTGCTCGTTTCCTCACA
LOC_Os09g04730
Os.8274.1.S1_at--1045--4111Chr09:2511692..2511716 (25 bp)
CGCAGCTTTCTTGGCATCAGACGAT
LOC_Os09g04730
Os.8274.1.S1_at--520--3891Chr09:2511633..2511657 (25 bp)
CTGGAGGAACTCGATCTAGGCTGTA
LOC_Os09g04730
Os.8274.1.S1_at--655--8951Chr09:2511582..2511606 (25 bp)
TGACAGGCTGGCGACTTACAAAGTG
LOC_Os09g04730
Os.8274.1.S1_at--1044--9851Chr09:2511566..2511590 (25 bp)
TACAAAGTGCACTTCTTGCTGGTAA
LOC_Os09g04730
Os.8274.1.S1_at--164--9791Chr09:2511485..2511509 (25 bp)
TAAACTGCTTAAATCGTGACCGGAA
LOC_Os09g04730
Os.8274.1.S1_at--153--10311Chr09:2511456..2511480 (25 bp)
TTTCGTTGCTTTGAAGTCACCCATG
LOC_Os09g04730
Target Sequence 
GCTGTTACAAAAACTGCCCTGCTTGGTCTCACAAAGGCTCTTGCTGCTGAGATGGGGCCAAATACTCGTGTTAACTGTAT
AGCCCCTGGTTTTGTTCCTACAAATTTTGCTCGTTTCCTCACAACTAATGACACCATTAAAAATGAGCTTATTGACAGGA
GCACACTTAAGAGATTGGGTACTGTGGAAGACATGGCTGCAGCCGCAGCTTTCTTGGCATCAGACGATGCATCATTCATT
ACAGCTGAAACTATTGTTGTTGCTGGAGGAACTCGATCTAGGCTGTAGATCTAAGCTGGGCTTGGCTATGGTTTGACAGG
CTGGCGACTTACAAAGTGCACTTCTTGCTGGTAAATAACCTATAGTTCTTGCTATAGGCAATATAATACTATATGTACAA
GGACCGATGTTAAACTGCTTAAATCGTGACCGGAACTTTTTTCGTTGCTTTGAAGTCACCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis