Browse Element(s) Details


Os.8276.1.S2_at

Description gb:AK111202.1
DB_XREF= gi:32996411
TID=Os.8276.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-178-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-178-E04, full insert sequence.
FL= gb:AK108963.1 gb:AK111202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4516011/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein
LOC_Os02g45150Os.55719.1.S1_at11/112+27381057..27383071expressed protein
LOC_Os02g45150Os.50517.1.S1_at2/112+27381057..27383071expressed protein
LOC_Os02g45160Os.8276.1.S1_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45160Os.8276.1.S2_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45170Os.20202.1.S1_at11/112+27410684..27416088expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8276.1.S2_at--932--7291Chr02:27385528..27385552 (25 bp)
GTGCGCATATATTGCCTCATGTTTC
LOC_Os02g45160
Os.8276.1.S2_at--219--10611Chr02:27385506..27385530 (25 bp)
TTCTGATCGCATCGCTGCGGATATT
LOC_Os02g45160
Os.8276.1.S2_at--752--5171Chr02:27385457..27385481 (25 bp)
GCAATGGACATTGGACAGCCCGTAT
LOC_Os02g45160
Os.8276.1.S2_at--133--8171Chr02:27385427..27385451 (25 bp)
GGAAAAGTTGCCCATGTCTGCCTGA
LOC_Os02g45160
Os.8276.1.S2_at--413--9031Chr02:27385355..27385379 (25 bp)
TGCACTGCACCTGACGAGATCCAGA
LOC_Os02g45160
Os.8276.1.S2_at--821--4251Chr02:27385304..27385328 (25 bp)
CCGGTTCGTGGCTAGTGGAGTACAA
LOC_Os02g45160
Os.8276.1.S2_at--350--9751Chr02:27385235..27385259 (25 bp)
TAATTCGGTCACACACATGCATGCA
LOC_Os02g45160
Os.8276.1.S2_at--23--1511Chr02:27385184..27385208 (25 bp)
AGCACTAGCTCGACCGATCATTGAT
LOC_Os02g45160
Os.8276.1.S2_at--995--1191Chr02:27385158..27385182 (25 bp)
AGTTTGATGATCTTTAGCCCGACCC
LOC_Os02g45160
Os.8276.1.S2_at--1077--9971Chr02:27385144..27385168 (25 bp)
TAGCCCGACCCGACTAATGAAGTGA
LOC_Os02g45160
Os.8276.1.S2_at--184--3012Chr04:5791121..5791147 (23 bp)
AATGAGATAATGTTCCGCGGCATAT
NONE
Target Sequence 
GTGCGCATATATTGCCTCATGTTTCTGATCGCATCGCTGCGGATATTGATTTTATCTTGGATTTAATTTGGGCAATGGAC
ATTGGACAGCCCGTATGGAACGGAAAAGTTGCCCATGTCTGCCTGATCAACGGCGGCGTGCTGCAAACCCATACAATGCA
CTACCTCCCTCCCTGCACTGCACCTGACGAGATCCAGAGAAAACCAGGATAGGAGTTGGCCCAGCCGGTTCGTGGCTAGT
GGAGTACAAAATTTGTGCACTGAGTTTGGATGGAAGAAATAGGTAGATGATGATAATTCGGTCACACACATGCATGCACA
TACAAGTGTGAAATGGCAGCAGGGAGCACTAGCTCGACCGATCATTGATCAGTTTGATGATCTTTAGCCCGACCCGACTA
ATGAAGTGATGAGTGATAAGTGATGACAATGAGATAATGTTCCGCGGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8276.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis