Browse Element(s) Details


Os.8294.1.S1_at

Description gb:AK068056.1
DB_XREF= gi:32978074
TID=Os.8294.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132O11, full insert sequence.
FL= gb:AK099031.1 gb:AK068056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0935911/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09290OsAffx.24172.1.S1_at11/112+4785232..4787038Cytochrome P450 71D10, putative, expressed
LOC_Os02g09300OsAffx.30486.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09300OsAffx.9762.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09310OsAffx.24172.2.S1_at11/112+4791454..4793238Cytochrome P450 family protein
LOC_Os02g09320OsAffx.24173.1.S1_at11/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09320Os.52428.1.S1_x_at1/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09330OsAffx.11952.1.S1_at10/112+4800371..4802379hypothetical protein
LOC_Os02g09330OsAffx.28081.1.S1_x_at1/112+4800371..4802379hypothetical protein
LOC_Os02g09340Os.52523.1.S1_at11/112+4803287..4806454expressed protein
LOC_Os02g09359Os.8294.1.S1_at11/112+4808246..4817116Protein kinase domain containing protein, expressed
LOC_Os02g09380Os.5301.1.S1_at11/112+4820461..4822679expressed protein
LOC_Os02g09390OsAffx.28081.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09390OsAffx.20024.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09400OsAffx.24174.1.S1_at11/112+4826411..4828204Cytochrome P450 family protein, expressed
LOC_Os02g09410NANA2+4828668..4830330Cytochrome P450 family protein, expressed
LOC_Os02g09420OsAffx.11954.1.S1_s_at11/112+4831146..4835173cyclase family protein, putative, expressed
LOC_Os02g09430Os.52186.1.S1_at11/112+4838496..4841887Exostosin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8294.1.S1_at--776--2911Chr02:4808789..4808813 (25 bp)
AAGGATGTCTTCGTCGAGGCTGAAC
LOC_Os02g09359
Os.8294.1.S1_at--304--451Chr02:4808595..4808619 (25 bp)
ATCTCATTCGTCTCATCCTGATAGT
LOC_Os02g09359
Os.8294.1.S1_at--992--6491Chr02:4808576..4808600 (25 bp)
GATAGTTCAGACTGCATCACAGAAG
LOC_Os02g09359
Os.8294.1.S1_at--295--3391Chr02:4808444..4808468 (25 bp)
CAGCAGGAGTTATTGGTTTCCTTCC
LOC_Os02g09359
Os.8294.1.S1_at--668--10291Chr02:4808428..4808452 (25 bp)
TTTCCTTCCGTGGAGCATTGTGTGT
LOC_Os02g09359
Os.8294.1.S1_at--1084--31Chr02:4808412..4808436 (25 bp)
ATTGTGTGTTTACCTCTGCATGCGT
LOC_Os02g09359
Os.8294.1.S1_at--514--611Chr02:4808393..4808417 (25 bp)
ATGCGTGTTTATGCCTTGTTTACCG
LOC_Os02g09359
Os.8294.1.S1_at--46--8771Chr02:4808377..4808401 (25 bp)
TGTTTACCGGCAGGTTTGGGTGCTT
LOC_Os02g09359
Os.8294.1.S1_at--53--3651Chr02:4808355..4808379 (25 bp)
CTTCCCTTGTCATCTCACAGATATA
LOC_Os02g09359
Os.8294.1.S1_at--270--6771Chr02:4808307..4808331 (25 bp)
GTTACAATCTGTTTTCGGTATGGTT
LOC_Os02g09359
Os.8294.1.S1_at--503--111Chr02:4808265..4808289 (25 bp)
ATTCTGCATATCTGGTGCTGATCCA
LOC_Os02g09359
Target Sequence 
AAGGATGTCTTCGTCGAGGCTGAACTGAANCGAATGGTGCTTGTTGGGCTTGCATGCAGTCAGAACAAACAGGAACAGAG
GCCGATAATGTCTGAAGTCGTTGAGCTGCTCAAGGGAGAATCTGCTGAGAAGCTTTCCAACTTGGAGAATGATGAGATGT
TCAAGCCTGATCTGACCAGCTCCTTCCAGGACTCATCTCATTCGTCTCATCCTGATAGTTCAGACTGCATCACAGAAGAG
AAGAACTCAAAAGCAGATACAATAGACGAGGCAGTTGATTCAAGTGAGACAGTACCTTCAGCTAGGTAGTTTGATGCATA
GAATTATAAGTTATCTGTCATTCATCAGCAGGAGTTATTGGTTTCCTTCCGTGGAGCATTGTGTGTTTACCTCTGCATGC
GTGTTTATGCCTTGTTTACCGGCAGGTTTGGGTGCTTCCCTTGTCATCTCACAGATATACTTATCTGTGTGTATGGTTAA
TTGTTACAATCTGTTTTCGGTATGGTTGTACCATGGCTTGTAAAATTCTGCATATCTGGTGCTGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis