Browse Element(s) Details


Os.8501.1.S1_at

Description gb:AK121742.1
DB_XREF= gi:37991365
TID=Os.8501.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0056G17.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086A17, full insert sequence.
FL= gb:AK121742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4286010/11ribosomal protein L35 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed
LOC_Os10g42860Os.8501.1.S1_at10/1110+22782311..22784131ribosomal protein L35 containing protein, expressed
LOC_Os10g42870Os.2980.1.S1_at11/1110+22785007..22788050POT family protein, expressed
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified
LOC_Os10g42900Os.46613.1.S2_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_s_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8501.1.S1_at--1004--4271Chr10:22783722..22783742 (21 bp)
CCTCCTCCATGAAGTTTCGATTCAG
LOC_Os10g42860
Os.8501.1.S1_at--181--1171Chr10:22783697..22783721 (25 bp)
AGTCATGAATGACGGCCAGGTCCGC
LOC_Os10g42860
Os.8501.1.S1_at--31--6011Chr10:22783667..22783691 (25 bp)
GAGAGCCGGCAAGCGCCACAATGCT
LOC_Os10g42860
Os.8501.1.S1_at--518--2231NONE
ACAATGCTCACCTCAAGTCGAAGGA
NONE
Os.8501.1.S1_at--495--5691Chr10:22782583..22782607 (25 bp)
GACTTCGGAAGCCTGCATTAGTGCA
LOC_Os10g42860
Os.8501.1.S1_at--15--5411Chr10:22782534..22782558 (25 bp)
GAAGCTCAACTTCTGCAGCTAGGAA
LOC_Os10g42860
Os.8501.1.S1_at--1148--6991Chr10:22782463..22782487 (25 bp)
GTACTGAGTGCCAACTACTGCATTC
LOC_Os10g42860
Os.8501.1.S1_at--1005--1971Chr10:22782447..22782471 (25 bp)
ACTGCATTCCTCACACTGATTTGAA
LOC_Os10g42860
Os.8501.1.S1_at--895--4171Chr10:22782409..22782433 (25 bp)
CCCAATTGTTGTTTGATGCATTCTC
LOC_Os10g42860
Os.8501.1.S1_at--984--9511Chr10:22782388..22782412 (25 bp)
TCTCATCTGGTTTTGTTTTCTGCAC
LOC_Os10g42860
Os.8501.1.S1_at--273--6811Chr10:22782374..22782398 (25 bp)
GTTTTCTGCACAATCTGGCTGATAA
LOC_Os10g42860
Target Sequence 
CCTCCTCCATGAAGTTTCGATTCAGAGTCATGAATGACGGCCAGGTCCGCAGGTGGAGAGCCGGCAAGCGCCACAATGCT
CACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAA
GCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGANGAGTACTGAGTGCC
AACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCAATTGTTGTTTGATGCATTCTCATCTGGTTTTGTT
TTCTGCACAATCTGGCTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis