Browse Element(s) Details


Os.8557.1.S1_at

Description gb:AK062395.1
DB_XREF= gi:32972413
TID=Os.8557.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.8557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D06, full insert sequence.
FL= gb:AK062395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g050604/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05030Os.7770.1.S1_at11/115+2427251..2428050expressed protein
LOC_Os05g05040OsAffx.26738.1.S1_at11/115+2430723..2431318expressed protein
LOC_Os05g05050Os.27639.1.S1_x_at9/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.8980.1.S1_at4/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.5632.1.A1_at1/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05060Os.8557.1.S1_at4/115+2442700..2442936expressed protein
LOC_Os05g05070OsAffx.4254.1.S1_at11/115+2445862..2446083hypothetical protein
LOC_Os05g05080OsAffx.26739.1.S1_s_at11/115+2448846..2449296expressed protein
LOC_Os05g05090Os.41695.15.S1_s_at11/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.5.S1_x_at9/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.3.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.2.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.4.S1_x_at1/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05100Os.50180.1.S1_at11/115+2455922..2456492expressed protein
LOC_Os05g05110Os.51864.1.S1_at11/115+2460207..2460655expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8557.1.S1_at--567--691Chr05:2442888..2442912 (25 bp)
ATGAGCAGCGATCTCCCGGTTGAAG
LOC_Os05g05060
Os.8557.1.S1_at--102--1451Chr05:2442839..2442863 (25 bp)
AGAAGATCCAGGCTTACAACCTCGT
LOC_Os05g05060
Os.8557.1.S1_at--991--5851Chr05:2442799..2442823 (25 bp)
GACCACAAGCAGGATATCGCCGATA
LOC_Os05g05060
Os.8557.1.S1_at--19--5571Chr05:2442762..2442786 (25 bp)
GAAAGCATGGCCGTCACCGTTGTTC
LOC_Os05g05060
Os.8557.1.S1_at--835--6991Chr05:2442651..2442675 (25 bp)
GTACGTCATCGTCTAGTGGCTATAC
NONE
Os.8557.1.S1_at--1074--1491Chr05:2442613..2442637 (25 bp)
AGCACGCATGGTTTACTAGGGAAAA
NONE
Os.8557.1.S1_at--724--251Chr05:2442539..2442563 (25 bp)
ATATGTCATGTGTAACTGGCCAGTC
NONE
Os.8557.1.S1_at--42--1171Chr05:2442518..2442542 (25 bp)
AGTCATCTACCACGGTGTCGCTAGA
NONE
Os.8557.1.S1_at--1058--7731Chr05:2442505..2442529 (25 bp)
GGTGTCGCTAGATGCCATGAACGTA
NONE
Os.8557.1.S1_at--587--1091Chr05:2442401..2442425 (25 bp)
AGTGGCTACTACCAGTCATGTAAAG
NONE
Os.8557.1.S1_at--930--871Chr05:2442369..2442393 (25 bp)
AGGCCCCATTTTGTGTCTTGAAACT
NONE
Target Sequence 
ATGAGCAGCGATCTCCCGGTTGAAGGTGTGGTGAGGGTGAGGAAGGTGGAGAAGATCCAGGCTTACAACCTCGTCACCAA
GCCATCAGCGACCACAAGCAGGATATCGCCGATAACAGGTCAGGCCGAAAGCATGGCCGTCACCGTTGTTCGGGTTGGAG
CTGTGGCTGGAAAACCAGACGACATCGTCCCAGTGGCTAGAATGAACAACTAAGTTATGATCGGAGAAATAGACGGTGTA
CGTCATCGTCTAGTGGCTATACATAACAACTAATTAGCACGCATGGTTTACTAGGGAAAATGTGAGTTTCTACTTGGGAT
AACTAGGGATGATGGTTATAGGCTCTGTCATATGTCATGTGTAACTGGCCAGTCATCTACCACGGTGTCGCTAGATGCCA
TGAACGTAATAATCCATATATGTATAAGTTTATTATATGTCAATAATTGTGTGACATGCTTGTAATGACATATATATAAG
ATACAAAAGTGGCTACTACCAGTCATGTAAAGGGCTAAAAGGCCCCATTTTGTGTCTTGAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis