Browse Element(s) Details


Os.8604.1.S1_a_at

Description gb:AK060197.1
DB_XREF= gi:32970215
TID=Os.8604.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-F05, full insert sequence.
FL= gb:AK060197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4773011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os11g47780OsAffx.7445.1.S1_at11/1111+28254030..28257720NB-ARC domain containing protein
LOC_Os11g47790OsAffx.19431.1.S1_at9/1111+28260460..28262218hypothetical protein
LOC_Os11g47790OsAffx.773.1.S1_x_at1/1111+28260460..28262218hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8604.1.S1_a_at--51--10531Chr11:28236254..28236278 (25 bp)
TTCAGTTCTTGAAGGACGCCGAGGA
LOC_Os11g47730
Os.8604.1.S1_a_at--725--6171Chr11:28236364..28236388 (25 bp)
GAGGACGGCGGGTACATCACCATCA
LOC_Os11g47730
Os.8604.1.S1_a_at--1086--5731Chr11:28236367..28236391 (25 bp)
GACGGCGGGTACATCACCATCATGG
LOC_Os11g47730
Os.8604.1.S1_a_at--391--8191Chr11:28236395..28236419 (25 bp)
GGAAGAACAACAAGGTCATCCCCTT
LOC_Os11g47730
Os.8604.1.S1_a_at--116--2471Chr11:28236400..28236424 (25 bp)
AACAACAAGGTCATCCCCTTGCCGT
LOC_Os11g47730
Os.8604.1.S1_a_at--63--7251Chr11:28236423..28236447 (25 bp)
GTCGCCTCCCAGCAATGGTGATGGT
LOC_Os11g47730
Os.8604.1.S1_a_at--597--9331Chr11:28236424..28236448 (25 bp)
TCGCCTCCCAGCAATGGTGATGGTG
LOC_Os11g47730
Os.8604.1.S1_a_at--70--7411Chr11:28236446..28236470 (25 bp)
GTGATCTGCAGTAGTGAGTTCTTTG
LOC_Os11g47730
Os.8604.1.S1_a_at--252--3431Chr11:28236454..28236478 (25 bp)
CAGTAGTGAGTTCTTTGCAAAATTT
LOC_Os11g47730
Os.8604.1.S1_a_at--834--2491Chr11:28236622..28236646 (25 bp)
AACATGAATATTATCAGCAGCCAAG
LOC_Os11g47730
Os.8604.1.S1_a_at--522--10171Chr11:28236633..28236657 (25 bp)
TATCAGCAGCCAAGAACTTCAGATC
LOC_Os11g47730
Target Sequence 
TTCAGTTCTTGAAGGACGCCGAGGAGAAGATGTATCGGCGGGCGCNCNCCGAGGAGGCCATGAGGGCGCGGAGGTCNCCG
CAGACGAGGTCACCGGCGGCGGCCGGAGAGGAGGACGGCGGGTACATCACCATCATGGTGGGGAAGAACAACAAGGTCAT
CCCCTTGCCGTCGCCTCCCAGCAATGGTGATGGTGATCTGCAGTAGTGAGTTCTTTGCAAAATTTTAATTAAGAAGGCCT
TAATTAACNTTGTTCATCCAGTGTTCTAGNGTAGCTCTTTGCCNGTAATTTTCTCTCTCTCTCTCTCTCTCTTTTCTTTT
NGGTTNATGGTCTTCNGATCATGCCAAATTGGATGGNTGGATGTACATAACATGAATATTATCAGCAGCCAAGAACTTCA
GATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8604.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis