Browse Element(s) Details


Os.8646.1.S1_at

Description gb:AK103317.1
DB_XREF= gi:32988526
TID=Os.8646.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125H15, full insert sequence.
FL= gb:AK103317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0126211/11Translocon-associated protein beta containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01230Os.49723.1.S1_at11/115+133407..138235zinc finger family protein, putative, expressed
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8646.1.S1_at--948--2411Chr05:161560..161670 (25 bp)
AAAACTTGATCCTGGTGCTACTGCT
LOC_Os05g01262
Os.8646.1.S1_at--60--10431Chr05:161477..161501 (25 bp)
TTATCACATACCGTGTTCCCACAAA
LOC_Os05g01262
Os.8646.1.S1_at--198--991Chr05:161093..161117 (25 bp)
AGGAGGCTTACTCAACGCCCATGTT
LOC_Os05g01262
Os.8646.1.S1_at--622--8831Chr05:161062..161086 (25 bp)
TGATATTCTTGCTGAGAGACCTCCC
LOC_Os05g01262
Os.8646.1.S1_at--1135--5971Chr05:161047..161071 (25 bp)
GAGACCTCCCCAACAGAAGTTTGAA
LOC_Os05g01262
Os.8646.1.S1_at--535--2251Chr05:160745..160769 (25 bp)
AAATATGGGTCGCTGGTCTCCGTTG
LOC_Os05g01262
Os.8646.1.S1_at--926--5271Chr05:160595..160619 (25 bp)
GAATGTACTCTCTCAGGTTTTATAA
LOC_Os05g01262
Os.8646.1.S1_at--149--2911Chr05:160572..160596 (25 bp)
AAGGTTCTCCTATGTACTCTAAGGG
LOC_Os05g01262
Os.8646.1.S1_at--407--4971Chr05:160532..160556 (25 bp)
GCATCATCTGTCATTTTGGCCTTCT
LOC_Os05g01262
Os.8646.1.S1_at--774--10871Chr05:160517..160541 (25 bp)
TTGGCCTTCTGTAGTTGAGCATCTC
LOC_Os05g01262
Os.8646.1.S1_at--339--7391Chr05:160490..160514 (25 bp)
GTGAGGCCTGAGCTGACTGACTTAA
LOC_Os05g01262
Target Sequence 
AAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGTGCAGGGCAAGTTTCAGGGCTCTCCTG
CCATTATCACATACCGTGTTCCCACAAANGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCT
TGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTT
CCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTNA
AATCTGNTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTAT
GTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGA
GCTGACTGACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis