Browse Element(s) Details


Os.8684.1.S1_a_at

Description gb:AK105011.2
DB_XREF= gi:42821626
TID=Os.8684.1
CNT=51
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H09, full insert sequence.
FL= gb:AK105011.2 gb:AK071794.1 gb:AK059804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0949011/11Cinnamyl-alcohol dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09440Os.51356.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09440OsAffx.11955.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09450Os.5603.1.S1_at11/112+4847748..4852501Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os02g09460Os.4729.1.S1_at11/112+4855962..4859043expressed protein
LOC_Os02g09470Os.4625.1.S1_at11/112+4859719..4862762expressed protein
LOC_Os02g09480OsAffx.11956.1.S1_at11/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09480Os.54569.1.S1_x_at1/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09490Os.8684.1.S1_a_at11/112+4870146..4874079Cinnamyl-alcohol dehydrogenase, putative, expressed
LOC_Os02g09500OsAffx.2552.1.S1_at11/112+4879066..4879437hypothetical protein
LOC_Os02g09510Os.12550.1.S1_s_at11/112+4888510..4890156UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8684.1.S1_a_at--827--7711Chr02:4870559..4870583 (25 bp)
GGGTGATCAACCAGCCGCTGAGCTT
LOC_Os02g09490
Os.8684.1.S1_a_at--906--8911Chr02:4870541..4870565 (25 bp)
TGAGCTTCATCTCGCCCATGGTGAT
LOC_Os02g09490
Os.8684.1.S1_a_at--868--4151Chr02:4870529..4870553 (25 bp)
CGCCCATGGTGATGCTCGGCCGGAA
LOC_Os02g09490
Os.8684.1.S1_a_at--1064--3791Chr02:4870426..4870450 (25 bp)
CTCCCAGATCGAGGTCGTCAAGATG
LOC_Os02g09490
Os.8684.1.S1_a_at--508--9631Chr02:4870274..4870298 (25 bp)
TCATGGCAGCATCCGTATGATCCGT
LOC_Os02g09490
Os.8684.1.S1_a_at--714--3531Chr02:4870265..4870289 (25 bp)
CATCCGTATGATCCGTTCTTGAACT
LOC_Os02g09490
Os.8684.1.S1_a_at--385--8671Chr02:4870234..4870258 (25 bp)
TGTGAGACTCTGACGACTTGTCCAT
LOC_Os02g09490
Os.8684.1.S1_a_at--251--2071Chr02:4870219..4870243 (25 bp)
ACTTGTCCATGTAACGTCCGTGTGC
LOC_Os02g09490
Os.8684.1.S1_a_at--178--7251Chr02:4870204..4870228 (25 bp)
GTCCGTGTGCCTTTCCGGTATAAAT
LOC_Os02g09490
Os.8684.1.S1_a_at--390--4251Chr02:4870190..4870214 (25 bp)
CCGGTATAAATTCGGCCTCGCAATA
LOC_Os02g09490
Os.8684.1.S1_a_at--791--9831Chr02:4870184..4870208 (25 bp)
TAAATTCGGCCTCGCAATATATGGA
LOC_Os02g09490
Target Sequence 
GGGTGATCAACCAGCCGCTGAGCTTCATCTCGCCCATGGTGATGCTCGGCCGGAAGGCCATCACCGGCAGCTTCATCGGG
AGCATGGCCGAGACGGAGGAGGTGCTCAACTTCTGCGTCGACAAGGGGCTCACCTCCCAGATCGAGGTCGTCAAGATGGA
CTACGTCAACCAGGCCCTCGAGCGCCTCGAGCGCAACGACGTCCGCTACCGCTTCGTCGTCGACGTCGCCGGCAGCAACA
TCGACGACGCCGACGCGCCGCCCGCCTGATCGCCGCCGTGCACCCTCATGGCAGCATCCGTATGATCCGTTCTTGAACTT
GTTTGTGTGAGACTCTGACGACTTGTCCATGTAACGTCCGTGTGCCTTTCCGGTATAAATTCGGCCTCGCAATATATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8684.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis