Browse Element(s) Details


Os.8726.1.S2_at

Description gb:AK068243.1
DB_XREF= gi:32978261
TID=Os.8726.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149G12, full insert sequence.
FL= gb:AK103243.1 gb:AK064883.1 gb:AK068243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3790410/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class
LOC_Os08g37860OsAffx.29576.2.S1_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37860OsAffx.29576.2.S1_x_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37874Os.23397.1.S2_at11/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874Os.23397.1.S1_at10/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37890OsAffx.17387.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37890OsAffx.17387.1.S1_s_at11/118+23866034..23867325expressed protein
LOC_Os08g37890Os.2251.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37904Os.8726.3.S1_at11/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S1_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S2_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37920Os.8726.2.S1_at11/118+23882219..23887812Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37930OsAffx.17389.1.S1_s_at10/118+23887808..23889828Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os08g37940Os.56997.1.S1_at11/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37940OsAffx.30715.2.S1_s_at1/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37950Os.12449.1.A1_at11/118+23898429..23906472Copper-transporting ATPase PAA1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8726.1.S2_at--154--2371Chr08:23877794..23877818 (25 bp)
AAAGCCTGGCTGACTTCCATATAGC
LOC_Os08g37904
Os.8726.1.S2_at--51--7031Chr08:23877828..23877852 (25 bp)
GTAACAGTACTTCCAAAAGGGCCAT
LOC_Os08g37904
Os.8726.1.S2_at--1154--4831Chr08:23877861..23877885 (25 bp)
GCTACAATGTTTCAGACTTCCAACT
LOC_Os08g37904
Os.8726.1.S2_at--759--2131Chr08:23877893..23877917 (25 bp)
ACAGTACTTACTTCCAAAGTGCCAT
LOC_Os08g37904
Os.8726.1.S2_at--1128--2851Chr08:23877909..23877933 (25 bp)
AAGTGCCATTACAGTCTTCCAGCAG
LOC_Os08g37904
Os.8726.1.S2_at--409--10671Chr08:23877925..23877949 (25 bp)
TTCCAGCAGCTACCATGTTTCAAAA
LOC_Os08g37904
Os.8726.1.S2_at--518--9911Chr08:23877995..23878019 (25 bp)
TACTGTGTCAGGTTACTGTCCGTTG
LOC_Os08g37904
Os.8726.1.S2_at--835--9471Chr08:23878044..23878068 (25 bp)
TCTGCTTTGTCCAACCCGAAACATA
LOC_Os08g37904
Os.8726.1.S2_at--628--711Chr08:23878185..23878209 (25 bp)
ATGATCGTGCTCTTTGTTATCTCCT
LOC_Os08g37904
Os.8726.1.S2_at--800--6791Chr08:23878200..23878224 (25 bp)
GTTATCTCCTACTTTTGTCAGTTTT
LOC_Os08g37904
Os.8726.1.S2_at--186--9511NONE
TCTCTGTGTTTGTCCAACCTGAAGC
NONE
Target Sequence 
AAAGCCTGGCTGACTTCCATATAGCTCTGAGCTAGTAACAGTACTTCCAAAAGGGCCATAAAATCAAGCTACAATGTTTC
AGACTTCCAACTGCTATTAACAGTACTTACTTCCAAAGTGCCATTACAGTCTTCCAGCAGCTACCATGTTTCAAAATAAA
GAGCTCAGTACAAATTCATCTGACTTTTTTTTTAACTACTATACTGTGTCAGGTTACTGTCCGTTGTAAAAAATTGTAAT
TTATTATCTCTCTGCTTTGTCCAACCCGAAACATAATTTGTATGTTTGGTTTTATCAATTTTGTTAGTTTTGTAAACCAG
CTGTAGAAAAGATTGATAGAAATATTGCATGCTTCATACCATGTTTCATATTTGTCAGAAATAGTTTATGAATGATCGTG
CTCTTTGTTATCTCCTACTTTTGTCAGTTTTGTAAAAGAATTTTGTAATTTATTATCTCTCTGTGTTTGTCCAACCTGAA
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8726.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis