Browse Element(s) Details


Os.8808.1.S1_at

Description gb:AK067761.1
DB_XREF= gi:32977779
TID=Os.8808.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119O04, full insert sequence.
FL= gb:AK067761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4711011/11ADP-ribosylation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47060Os.53524.1.S1_at11/112+28720914..28725064WRKY DNA binding domain containing protein, expressed
LOC_Os02g47070OsAffx.12533.1.S1_at11/112+28732333..28733209hypothetical protein
LOC_Os02g47080OsAffx.24759.1.S1_at11/112+28742945..28743244hypothetical protein
LOC_Os02g47090Os.56367.1.A1_at11/112+28743728..28747223POT family protein, expressed
LOC_Os02g47100OsAffx.24760.1.S1_at11/112+28747508..28748065hypothetical protein
LOC_Os02g47110Os.8808.1.S1_at11/112+28749301..28752750ADP-ribosylation factor, putative, expressed
LOC_Os02g47120OsAffx.24761.1.S1_at11/112+28754076..28761416RelA/SpoT containing protein, expressed
LOC_Os02g47130Os.18563.1.S1_x_at11/112+28762916..28766231expressed protein
LOC_Os02g47140Os.11528.1.S1_at11/112+28767053..2876825260S ribosomal protein L12, putative, expressed
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8808.1.S1_at--1120--4431Chr02:28752171..28752195 (25 bp)
GCCTTGGCCTCTATGATTTAAAGAA
LOC_Os02g47110
Os.8808.1.S1_at--325--3051Chr02:28752194..28752218 (25 bp)
AATCGCATCTGGCATATCCAAGGCT
LOC_Os02g47110
Os.8808.1.S1_at--717--8311Chr02:28752215..28752239 (25 bp)
GGCTCTTGTGCCCTCAAAGGTGATG
LOC_Os02g47110
Os.8808.1.S1_at--11--9891Chr02:28752271..28752295 (25 bp)
TACTCTGAAGGGACTGGAAGCCTCA
LOC_Os02g47110
Os.8808.1.S1_at--602--1031Chr02:28752337..28752361 (25 bp)
AGGTCTGCCTGTAAGATTCTTCCGT
LOC_Os02g47110
Os.8808.1.S1_at--1009--1251Chr02:28752350..28752374 (25 bp)
AGATTCTTCCGTTGACACTAACAAT
LOC_Os02g47110
Os.8808.1.S1_at--762--10471Chr02:28752440..28752464 (25 bp)
TTACATTGCTCAGGCGATATGCTTC
LOC_Os02g47110
Os.8808.1.S1_at--454--1291Chr02:28752491..28752515 (25 bp)
AGATGCATGAGAGCCTGACTACTTG
LOC_Os02g47110
Os.8808.1.S1_at--547--5691Chr02:28752507..28752531 (25 bp)
GACTACTTGAAACATTACCACTGCA
LOC_Os02g47110
Os.8808.1.S1_at--238--4371Chr02:28752524..28752548 (25 bp)
CCACTGCAGTTTTGTCATGGGTAGT
LOC_Os02g47110
Os.8808.1.S1_at--615--6771Chr02:28752590..28752614 (25 bp)
GTTACAGCTAACTATCGGATGCATT
LOC_Os02g47110
Target Sequence 
GCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTGATGGTCTTTATGAG
GGCTTGGACTGGTTGGCAAGTACTCTGAAGGGACTGGAAGCCTCAGGTCGCCTCCCCTCAGGAGGGNCCTCATTGTTNTA
AGTAGCAGGTCTGCCTGTAAGATTCTTCCGTTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATTATNT
TGGTGTGGAAGGCCTTACATGGTCACNCCTTACATTGCTCAGGCGATATGCTTCGCGGTGTCGATTCTACTGAAGGCAAA
AGATGCATGAGAGCCTGACTACTTGAAACATTACCACTGCAGTTTTGTCATGGGTAGTAGTGTAGTAGTACCCATCGAGT
CTNGTGAATTTCCTTGAATGTTACAGCTAACTATCGGATGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis