Browse Element(s) Details


Os.8914.1.S1_at

Description gb:AK120853.1
DB_XREF= gi:37990476
TID=Os.8914.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023P20, full insert sequence.
FL= gb:AK120853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1902011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed
LOC_Os03g18990OsAffx.25136.1.S1_x_at11/113+10622599..10624308hypothetical protein
LOC_Os03g18990OsAffx.19217.1.S1_x_at1/113+10622599..10624308hypothetical protein
LOC_Os03g19000OsAffx.12931.1.S1_at11/113+10624831..10625595Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_s_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19020Os.8914.1.S1_at11/113+10630243..10634687PHD-finger family protein, expressed
LOC_Os03g19030OsAffx.15200.2.S1_x_at5/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.2.S1_at3/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.3.S1_s_at1/113+10640221..10640985hypothetical protein
LOC_Os03g19040Os.54627.1.S1_at11/113+10641421..10642485expressed protein
LOC_Os03g19050Os.35344.18.S1_x_at10/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050Os.35344.3.S1_x_at9/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_at5/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_x_at4/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19060NANA3+10652230..10655534hypothetical protein
LOC_Os03g19070Os.10091.1.S1_at11/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_s_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.2.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8914.1.S1_at--911--8691Chr03:10634217..10634241 (25 bp)
TGTGCCCATCGATGAGAGGCTTATG
LOC_Os03g19020
Os.8914.1.S1_at--983--8091Chr03:10634257..10634281 (25 bp)
GGACGCTGGTTGTCATCCCTTCATG
LOC_Os03g19020
Os.8914.1.S1_at--877--10011Chr03:10634288..10634312 (25 bp)
TAGCAATTGCTGTCATTCTCCGGGC
LOC_Os03g19020
Os.8914.1.S1_at--524--10591Chr03:10634303..10634327 (25 bp)
TTCTCCGGGCAATTATTCTTGTTGA
LOC_Os03g19020
Os.8914.1.S1_at--585--1611Chr03:10634332..10634356 (25 bp)
AGCTGTTCATCATGCTGCTTATCTG
LOC_Os03g19020
Os.8914.1.S1_at--801--5631Chr03:10634374..10634398 (25 bp)
GACATAAACGGCATGCTTTTGTAAA
LOC_Os03g19020
Os.8914.1.S1_at--385--4951Chr03:10634419..10634443 (25 bp)
GCATTTATATCTGCTGTTACTGCCA
LOC_Os03g19020
Os.8914.1.S1_at--473--3371Chr03:10634438..10634462 (25 bp)
CTGCCATTTGTTCAGTCGTAAAGGC
LOC_Os03g19020
Os.8914.1.S1_at--998--2951Chr03:10634547..10634571 (25 bp)
AAGGCCATTCATTCTGTTGACACGC
LOC_Os03g19020
Os.8914.1.S1_at--294--9531Chr03:10634597..10634621 (25 bp)
TCTAATTGAATTGCCCTATTTGTCT
LOC_Os03g19020
Os.8914.1.S1_at--734--791Chr03:10634645..10634669 (25 bp)
ATGTGGTATTCGATCATCTCTTAAA
LOC_Os03g19020
Target Sequence 
TGTGCCCATCGATGAGAGGCTTATGGAAATCGAGACAAGGGGACGCTGGTTGTCATCCCTTCATGTCCTCCTAGCAATTG
CTGTCATTCTCCGGGCAATTATTCTTGTTGAAAATAGCTGTTCATCATGCTGCTTATCTGTCAGCAATGTGATCGATGAC
ATAAACGGCATGCTTTTGTAAAGTTTTTCTGTTTTAGACTAGGCATTTATATCTGCTGTTACTGCCATTTGTTCAGTCGT
AAAGGCGACCTAAAAGATCACACAACGGCCAAGATAATTTGGATAGCTTAGNATGTATAGATTGTGCCATTGGGGAAATC
AGGTTTTAGGAAGGCCATTCATTCTGTTGACACGCTCTTTCGCCCATGAATATTTTTTTTTCTAATTGAATTGCCCTATT
TGTCTCANNNNNANGATTTTTTATTGTGATGTGGTATTCGATCATCTCTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis