Browse Element(s) Details


Os.8957.1.S1_at

Description gb:AK071523.1
DB_XREF= gi:32981546
TID=Os.8957.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529H11.3 (P0529H11.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100N13, full insert sequence.
FL= gb:AK071523.1 gb:AK099114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6306011/11phosphatidic acid phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63030Os.45774.1.S1_at9/111+36839516..36843462transposon protein, putative, unclassified
LOC_Os01g63040OsAffx.31018.3.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040OsAffx.31018.2.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040Os.50578.1.S1_x_at7/111+36844189..36848735hypothetical protein
LOC_Os01g63050Os.25308.1.A1_at6/111+36854891..36856690expressed protein
LOC_Os01g63050OsAffx.28148.1.S1_x_at2/111+36854891..36856690expressed protein
LOC_Os01g63060Os.8957.1.S1_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63060Os.8957.2.S1_x_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63060Os.8957.1.S1_a_at11/111+36867012..36872045phosphatidic acid phosphatase, putative, expressed
LOC_Os01g63080Os.45173.1.S1_x_at1/111+36875130..36883040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63090OsAffx.22848.4.S1_x_at3/111+36887867..36889513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63090OsAffx.22848.4.S1_at2/111+36887867..36889513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63090OsAffx.22848.3.S1_x_at1/111+36887867..36889513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63100NANA1+36891035..36896658retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8957.1.S1_at--813--711Chr01:36871588..36871612 (25 bp)
ATGATCAGCTGCTTTTCATCAGGCG
LOC_Os01g63060
Os.8957.1.S1_at--394--912Chr03:29591436..29591455 (20 bp)
AGGCGGCTTGTCTAGTTGTCTTTCA
NONE
Os.8957.1.S1_at--714--1471Chr01:36871662..36871686 (25 bp)
AGAATGCTTGGTTTCCTCTGTATGA
LOC_Os01g63060
Os.8957.1.S1_at--414--10131Chr01:36871682..36871706 (25 bp)
TATGATGACTGGCTTCTCAGGTGCC
LOC_Os01g63060
Os.8957.1.S1_at--188--5991Chr01:36871758..36871782 (25 bp)
GAGACAGAGCCAGGTGCCATAGCAC
LOC_Os01g63060
Os.8957.1.S1_at--324--1651Chr01:36871835..36871859 (25 bp)
AGCGACTTTTCTCAGGCTGCCATTA
LOC_Os01g63060
Os.8957.1.S1_at--585--9191Chr01:36871852..36871876 (25 bp)
TGCCATTACAGTTTTGCACCCTTGT
LOC_Os01g63060
Os.8957.1.S1_at--702--5091Chr01:36871867..36871891 (25 bp)
GCACCCTTGTATCGAATCTCTAGTT
LOC_Os01g63060
Os.8957.1.S1_at--250--10051Chr01:36871887..36871911 (25 bp)
TAGTTCTCTTCCCTCAATTTCTTAG
LOC_Os01g63060
Os.8957.1.S1_at--472--2711Chr01:36871945..36871969 (25 bp)
AAGCATAGCTTCTCCCGCTGTATAT
LOC_Os01g63060
Os.8957.1.S1_at--73--5491Chr01:36871986..36872010 (25 bp)
GAACTTAGCTTAATCTTGGCATGGA
LOC_Os01g63060
Target Sequence 
ATGATCAGCTGCTTTTCATCAGGCGGCTTGTCTAGTTGTCTTTCACATTGACAGGGGAATCTGCTAGGAGACAAAGAATG
CTTGGTTTCCTCTGTATGATGACTGGCTTCTCAGGTGCCTCTGCCCCTGCATTTTGTCTGTCCGCCATGGCAATATGTTC
ACGGATGAATGAGACAGAGCCAGGTGCCATAGCACCAGCATTGCTATGGACTGCAAAGGAATCAGAGTCTCAACTCTCAA
GTCTCCCAGCGACTTTTCTCAGGCTGCCATTACAGTTTTGCACCCTTGTATCGAATCTCTAGTTCTCTTCCCTCAATTTC
TTAGGTTATGGAATGAACACTTTCAGGTTGATTTGAGAAGCATAGCTTCTCCCGCTGTATATATATTGTCACATTGATGA
ACTTAGCTTAATCTTGGCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis