Browse Element(s) Details


Os.8968.1.S1_x_at

Description gb:AK111503.1
DB_XREF= gi:37988166
TID=Os.8968.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P21, full insert sequence.
FL= gb:AK112026.1 gb:AK111503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4879011/11AML1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48740Os.23544.1.S1_at11/112+29827488..29832167Fimbrin-like protein 2, putative, expressed
LOC_Os02g48750OsAffx.24789.1.S1_at11/112+29838720..29839364hypothetical protein
LOC_Os02g48760OsAffx.24790.1.S1_at11/112+29842034..29842519hypothetical protein
LOC_Os02g48770Os.11812.1.S1_at11/112+29844503..29846574SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os02g48780NANA2+29847702..29848589BAG domain containing protein, expressed
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8968.1.S1_x_at--148--2931Chr02:29860757..29860781 (25 bp)
AAGGACTGCACTCATTTCACATTTC
LOC_Os02g48790
Os.8968.1.S1_x_at--829--1871Chr02:29860801..29860825 (25 bp)
ACGAGGATAAGAGATGCCGCCCCAT
LOC_Os02g48790
Os.8968.1.S1_x_at--763--5411Chr02:29861005..29861029 (25 bp)
GAACCATTTCCCATCAACGGCATAT
LOC_Os02g48790
Os.8968.1.S1_x_at--395--271Chr02:29861026..29861050 (25 bp)
ATATGTATCCATATGCCACTGGAAG
LOC_Os02g48790
Os.8968.1.S1_x_at--462--691Chr02:29861130..29861154 (25 bp)
ATGACCATTGCTTTGGAGTCGCCGA
LOC_Os02g48790
Os.8968.1.S1_x_at--1039--7211Chr02:29861147..29861171 (25 bp)
GTCGCCGATAAATCTTAACTGCCTA
LOC_Os02g48790
Os.8968.1.S1_x_at--819--5952Chr02:29861172..29861196 (25 bp)
GAGAAGAGTTTTCCTTCCCAAAGTG
LOC_Os02g48790
Os.8968.1.S1_x_at--1037--10351Chr02:29861263..29861287 (25 bp)
TTTTTGTGGCAAACGATGTCGCCCC
LOC_Os02g48790
Os.8968.1.S1_x_at--267--6051Chr02:29861318..29861342 (25 bp)
GAGTTGGGAGTCTGCTAGGTCTCTC
LOC_Os02g48790
Os.8968.1.S1_x_at--505--3511Chr02:29861347..29861371 (25 bp)
CATGTCTTCCTTTCAAGTTTCAACC
LOC_Os02g48790
Os.8968.1.S1_x_at--600--3171Chr02:29861403..29861427 (25 bp)
AATTGGTCGCATTTGATTTGGTGTA
LOC_Os02g48790
Target Sequence 
AAGGACTGCACTCATTTCACATTTCCAGAATTCAAGTTTAATGAACGAGGATAAGAGATGCCGCCCCATTCTTTTTCATT
NTAATGGGCCAGATGCTGGAAATCAGGAACCATTTCCCATCAACGGCATATGTATCCATATGCCACTGGAAGATGGAGCA
ATTGCAACAGGGGATCCCTTTGGAAATGAAGAGGACAACAATCAGAACGAGAGGACAGCAGGAGAAGAGTTATGACCATT
GCTTTGGAGTCGCCGATAAATCTTAACTGCCTAGAGAAGAGTTTTCCTTCCCAAAGTGTATAGAAGTGAGAAAGATTGGT
TAGCTGCGAAAGTTTGTGGTGTGGCATGNCGCATCTACTAGTTTTTTTTGTGGCAAACGATGTCGCCCCCTGAAGAACAA
AAAAGTGACTTGGAGTTGAGAGTTGGGAGTCTGCTAGGTCTCTCTCTCCATGTCTTCCTTTCAAGTTTCAACCCCCTCTG
TACAGATAGATGTCGGGAGTTGATAATTGGTCGCATTTGATTTGGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8968.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis