Browse Element(s) Details


Os.8984.1.S1_at

Description gb:AK058752.1
DB_XREF= gi:32968770
TID=Os.8984.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full insert sequence.
FL= gb:AK058752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1366011/11meiosis 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13590OsAffx.12021.1.S1_at11/112+7299770..7300027hypothetical protein
LOC_Os02g13600OsAffx.12022.1.S1_s_at11/112+7300585..7301657expressed protein
LOC_Os02g13610NANA2+7303093..7303464retrotransposon protein, putative, unclassified
LOC_Os02g13620OsAffx.24230.1.S1_x_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13620OsAffx.24230.1.S1_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13630Os.56059.2.S1_at10/112+7312011..7314657expressed protein
LOC_Os02g13630Os.56059.1.S1_at9/112+7312011..7314657expressed protein
LOC_Os02g13640Os.15093.1.S1_at11/112+7316399..7319487Leucine Rich Repeat family protein, expressed
LOC_Os02g13650Os.32259.1.S1_at11/112+7321447..7322881expressed protein
LOC_Os02g13660Os.8984.1.S1_at11/112+7323779..7325175meiosis 5, putative, expressed
LOC_Os02g13670OsAffx.2600.1.S1_at11/112+7333138..7334086Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g13679NANA2+7338896..7339693NA
LOC_Os02g13690OsAffx.24231.1.S1_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13690OsAffx.24231.1.S1_x_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13700OsAffx.12023.1.S1_at10/112+7348539..7349632hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8984.1.S1_at--489--6331Chr02:7324235..7324259 (25 bp)
GATGCACTTTCAAACACTGGAACTG
LOC_Os02g13660
Os.8984.1.S1_at--1062--2551Chr02:7324215..7324239 (25 bp)
AACTGATGGTACTGGTGCTCTGCTC
LOC_Os02g13660
Os.8984.1.S1_at--891--6131Chr02:7324187..7324211 (25 bp)
GAGGGAGCAGCTGCATACCTCAACT
LOC_Os02g13660
Os.8984.1.S1_at--984--10491Chr02:7324123..7324147 (25 bp)
TTAAGGATTGCATCGTCGTGGCCAT
LOC_Os02g13660
Os.8984.1.S1_at--466--691Chr02:7324100..7324124 (25 bp)
ATGACCTCTGATGGCGCTGCTTCTT
LOC_Os02g13660
Os.8984.1.S1_at--151--10571Chr02:7324080..7324104 (25 bp)
TTCTTCCCAGGCTGAGATCTTCAAG
LOC_Os02g13660
Os.8984.1.S1_at--504--6751Chr02:7324032..7324056 (25 bp)
GTTCAAGAGGTGTTTCCTGGCTAAA
LOC_Os02g13660
Os.8984.1.S1_at--364--8311Chr02:7324014..7324038 (25 bp)
GGCTAAATTATTTGCTCCTATGTGT
LOC_Os02g13660
Os.8984.1.S1_at--599--4791Chr02:7324001..7324025 (25 bp)
GCTCCTATGTGTTTCTTCATTGATG
LOC_Os02g13660
Os.8984.1.S1_at--834--9231Chr02:7323956..7323980 (25 bp)
TCCATTGTATTCTTTTGGTTTGCAA
LOC_Os02g13660
Os.8984.1.S1_at--966--6851Chr02:7323939..7323963 (25 bp)
GTTTGCAATGTAATACCACCATCTA
LOC_Os02g13660
Target Sequence 
GATGCACTTTCAAACACTGGAACTGATGGTACTGGTGCTCTGCTCCGCGAGGGAGCAGCTGCATACCTCAACTCCATTGT
GAACAAGAAATTCCCTTTTACCACCCAACAGGTTAAGGATTGCATCGTCGTGGCCATGACCTCTGATGGCGCTGCTTCTT
CCCAGGCTGAGATCTTCAAGAAGGCAAATGATTATCACTACTAGTTCAAGAGGTGTTTCCTGGCTAAATTATTTGCTCCT
ATGTGTTTCTTCATTGATGTAATCTTGCTGTTTGATAAATCCATTGTATTCTTTTGGTTTGCAATGTAATACCACCATCT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis