Browse Element(s) Details


Os.8993.1.S1_at

Description gb:AK099337.1
DB_XREF= gi:32984546
TID=Os.8993.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029N05, full insert sequence.
FL= gb:AK099337.1 gb:AK060459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6469011/11U6 snRNA-associated Sm-like protein LSm3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64620Os.30373.1.S1_at11/111+37832004..37832938Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g64630Os.12067.2.S1_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64630Os.12067.1.S1_x_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64640NANA1+37840683..37841376Histone H3, putative, expressed
LOC_Os01g64650Os.10783.2.S1_x_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64650Os.10783.1.S1_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64660Os.3408.1.A2_a_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64660Os.3408.1.A1_x_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64670Os.47717.1.A1_s_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64670Os.3408.2.S1_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64680Os.12354.1.S1_at11/111+37852779..37853582BolA-like family protein, putative, expressed
LOC_Os01g64690Os.8993.1.S1_at11/111+37854257..37855951U6 snRNA-associated Sm-like protein LSm3, putative, expressed
LOC_Os01g64700Os.18696.1.S1_at10/111+37862801..37866231Tubby protein, putative, expressed
LOC_Os01g64710NANA1+37868950..37869207hypothetical protein
LOC_Os01g64720Os.14322.2.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720OsAffx.11732.2.S1_s_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.1.S1_at11/111+37878839..37883345expressed protein
LOC_Os01g64720Os.14322.2.S1_x_at11/111+37878839..37883345expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8993.1.S1_at--1002--3571Chr01:37854956..37854975 (20 bp)
CATATGAAGAAATTGTGCGCACCAC
LOC_Os01g64690
Os.8993.1.S1_at--33--10831Chr01:37854539..37854963 (25 bp)
TTGTGCGCACCACAAAACGCACTAT
LOC_Os01g64690
Os.8993.1.S1_at--544--4312Chr01:37854512..37854536 (25 bp)
CCTTCCTTTTTGTTCGAGGTGATGG
LOC_Os01g64690
Os.8993.1.S1_at--941--4171Chr01:37854467..37854491 (25 bp)
CCCTCCGAACGGCATGAAGTATGAA
LOC_Os01g64690
Os.8993.1.S1_at--6--2931Chr01:37854444..37854468 (25 bp)
AAGGAAGCTCCTGCCGATTGTCAAC
LOC_Os01g64690
Os.8993.1.S1_at--332--3831Chr01:37854434..37854458 (25 bp)
CTGCCGATTGTCAACCATGAGTAAT
LOC_Os01g64690
Os.8993.1.S1_at--407--7431Chr01:37854386..37854410 (25 bp)
GTGTTATGTGCTGAAGTGCTACTAT
LOC_Os01g64690
Os.8993.1.S1_at--912--511Chr01:37854310..37854334 (25 bp)
ATCGAGGTGCTAGTTTCTACTGTCA
LOC_Os01g64690
Os.8993.1.S1_at--1028--6831Chr01:37854298..37854322 (25 bp)
GTTTCTACTGTCATGTTGAATCAAC
LOC_Os01g64690
Os.8993.1.S1_at--997--6651Chr01:37854284..37854308 (25 bp)
GTTGAATCAACCTTTTGTTACCAGA
LOC_Os01g64690
Os.8993.1.S1_at--488--1231Chr01:37854262..37854286 (25 bp)
AGATTAATCAACTCAATCCCGAAGC
LOC_Os01g64690
Target Sequence 
CATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCT
CCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAAT
GGCATGTGTTATGTGCTGAAGTGCTACTATTTNTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTNT
GATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis