Browse Element(s) Details


Os.9021.4.S1_at

Description gb:AK120832.1
DB_XREF= gi:37990455
TID=Os.9021.4
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019O05, full insert sequence.
FL= gb:AK120832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g085309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08470Os.55390.1.S1_x_at1/1111+4472523..4476556Heat shock cognate 70 kDa protein, putative
LOC_Os11g08470Os.27131.1.S1_at1/1111+4472523..4476556Heat shock cognate 70 kDa protein, putative
LOC_Os11g08470OsAffx.1705.1.S1_at1/1111+4472523..4476556Heat shock cognate 70 kDa protein, putative
LOC_Os11g08480OsAffx.30884.1.S1_x_at11/1111+4477351..4478577hypothetical protein
LOC_Os11g08490OsAffx.30885.1.S1_at11/1111+4481822..4482850hypothetical protein
LOC_Os11g08500OsAffx.30886.1.S1_at9/1111+4485430..4487139hypothetical protein
LOC_Os11g08510NANA11+4487941..4490675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g08520OsAffx.18748.1.S1_x_at11/1111+4491938..4492258hypothetical protein
LOC_Os11g08520OsAffx.18748.1.S1_at11/1111+4491938..4492258hypothetical protein
LOC_Os11g08530Os.9021.4.S1_at9/1111+4501064..4503989expressed protein
LOC_Os11g08536OsAffx.7046.1.S1_at11/1111+4505263..4506128hypothetical protein
LOC_Os11g08542NANA11+4506684..4509654retrotransposon protein, putative, unclassified
LOC_Os11g08550OsAffx.11259.1.S1_at1/1111+4510000..4515641retrotransposon protein, putative, unclassified
LOC_Os11g08569Os.12282.1.S1_a_at10/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.24410.1.S1_s_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_x_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.31929.5.S1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9021.4.S1_at--435--9411Chr11:4501336..4501360 (25 bp)
TCGTCGTGGTCTCAGGAGGCCATGT
LOC_Os11g08530
Os.9021.4.S1_at--921--1872Chr11:4501252..4501276 (25 bp)
ACGAGGAGGAGAGTCCACTCCAACC
LOC_Os11g08530
Os.9021.4.S1_at--996--4371Chr11:4501215..4501239 (25 bp)
CCAAGCAAAACAAAGGAGTCCCAGC
LOC_Os11g08530
Os.9021.4.S1_at--740--6091Chr11:4501200..4501224 (25 bp)
GAGTCCCAGCAAAGGAGGTTCGACA
LOC_Os11g08530
Os.9021.4.S1_at--583--3291Chr11:4501191..4501215 (25 bp)
CAAAGGAGGTTCGACAGCGACAGCG
LOC_Os11g08530
Os.9021.4.S1_at--122--1951Chr11:4501155..4501179 (25 bp)
ACGGCGACGACAGCAGTGTAAAATG
LOC_Os11g08530
Os.9021.4.S1_at--903--7311Chr11:4501119..4501143 (25 bp)
GTGAATTTAAATTTGTAACAGCGAT
LOC_Os11g08530
Os.9021.4.S1_at--480--3391Chr11:4501101..4501125 (25 bp)
CAGCGATGTTTGATGTTTGGATGTT
LOC_Os11g08530
Os.9021.4.S1_at--748--6851Chr11:4501079..4501103 (25 bp)
GTTTGCTCTTCAATGTTTGGATGTT
LOC_Os11g08530
Os.9021.4.S1_at--757--511Chr11:4501038..4501062 (25 bp)
ATCGATTGATTTTTGGATGTGAATT
NONE
Os.9021.4.S1_at--592--8831Chr11:4501001..4501025 (25 bp)
TGATATGAGATTTGGATGTGACGTG
NONE
Target Sequence 
TCGTCGTGGTCTCAGGAGGCCATGTGGAGCGAGATGAGGCATGGCGGCTGCGGGAGGTCGGCCATCGCCGGCCGACGCCC
TCCGACGAGGAGGAGAGTCCACTCCAACCCCAACCCCAACCCCAAGCAAAACAAAGGAGTCCCAGCAAAGGAGGTTCGAC
AGCGACAGCGGCGGAGAGCCGACGGCGACGACAGCAGTGTAAAATGAATGTTTGGATGTGAATTTAAATTTGTAACAGCG
ATGTTTGATGTTTGGATGTTTGCTCTTCAATGTTTGGATGTTGAAAACGAAGTGTAAAATCGATTGATTTTTGGATGTGA
ATTTAAATTTGGATATGATATGAGATTTGGATGTGACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9021.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis