Browse Element(s) Details


Os.9065.1.S1_at

Description gb:AK106337.1
DB_XREF= gi:32991546
TID=Os.9065.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G03, full insert sequence.
FL= gb:AK072050.1 gb:AK106337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3513011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35080Os.9839.1.S1_at11/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35080OsAffx.26339.1.S1_x_at10/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35090Os.426.1.S1_at8/114+21142239..2114481040S ribosomal protein S10, putative, expressed
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed
LOC_Os04g35150OsAffx.14142.1.S1_at11/114+21174989..21178008Thioredoxin family protein
LOC_Os04g35160OsAffx.14143.1.S1_at11/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35160OsAffx.15607.1.S1_at1/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35170Os.23819.1.S1_s_at11/114+21186131..21189779expressed protein
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9065.1.S1_at--138--4471Chr04:21165608..21165632 (25 bp)
GCCTCGTCTAATCTAAGCTGCAATG
LOC_Os04g35130
Os.9065.1.S1_at--1048--3731Chr04:21165620..21165644 (25 bp)
CTAAGCTGCAATGCCGGCGAGCTAG
LOC_Os04g35130
Os.9065.1.S1_at--558--1571Chr04:21165639..21165663 (25 bp)
AGCTAGCTGCTCATCACTGCGTCAT
LOC_Os04g35130
Os.9065.1.S1_at--900--6831Chr04:21165699..21165723 (25 bp)
GTTTCTTTCTTGTCTGATATTTACA
LOC_Os04g35130
Os.9065.1.S1_at--621--10231Chr04:21165727..21165751 (25 bp)
TATTGTCACTGCATACTTTGCGAGT
LOC_Os04g35130
Os.9065.1.S1_at--581--4931Chr04:21165737..21165761 (25 bp)
GCATACTTTGCGAGTTGGTTAGTTT
LOC_Os04g35130
Os.9065.1.S1_at--64--991Chr04:21165774..21165798 (25 bp)
AGGAGATCGATCAGGTTGTGTGTAC
LOC_Os04g35130
Os.9065.1.S1_at--367--4051Chr04:21165781..21165805 (25 bp)
CGATCAGGTTGTGTGTACAGGGAAA
LOC_Os04g35130
Os.9065.1.S1_at--729--9871Chr04:21165796..21165820 (25 bp)
TACAGGGAAATTTTGTCGCGAACAT
LOC_Os04g35130
Os.9065.1.S1_at--751--10231Chr04:21165807..21165831 (25 bp)
TTTGTCGCGAACATTTTGAGATATC
LOC_Os04g35130
Os.9065.1.S1_at--448--10391Chr04:21165820..21165844 (25 bp)
TTTTGAGATATCGAATTTTGGGTGG
LOC_Os04g35130
Target Sequence 
GCCTCGTCTAATCTAAGCTGCAATGCCGGCGAGCTAGCTGCTCATCACTGCGTCATNTTCGAAATATCGTCTTCTTTTTT
TTCTTCTTCTTGTTTCTTTCTTGTCTGATATTTACAGTATATTGTCACTGCATACTTTGCGAGTTGGTTAGTTTGGAAGG
AGGGTGAGGAGATCGATCAGGTTGTGTGTACAGGGAAATTTTGTCGCGAACATTTTGAGATATCGAATTTTGGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis