Browse Element(s) Details


Os.9207.1.S1_at

Description gb:AK102938.1
DB_XREF= gi:32988147
TID=Os.9207.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114J20, full insert sequence.
FL= gb:AK060049.1 gb:AK102938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4802011/11Sterol desaturase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47960OsAffx.7447.1.S1_at11/1111+28374523..28374975hypothetical protein
LOC_Os11g47970Os.11573.7.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A2_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A1_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.5.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47980OsAffx.19434.1.S1_at11/1111+28380025..28381904expressed protein
LOC_Os11g47980Os.22640.1.A1_at1/1111+28380025..28381904expressed protein
LOC_Os11g47990OsAffx.27915.1.S1_at4/1111+28382689..28382952hypothetical protein
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed
LOC_Os11g48010OsAffx.19437.1.S1_at11/1111+28395006..28395278hypothetical protein
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed
LOC_Os11g48050Os.9463.1.S1_at11/1111+28407322..28409136expressed protein
LOC_Os11g48060Os.5982.1.S1_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48060OsAffx.31531.1.S1_s_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48064OsAffx.7448.1.S1_at11/1111+28423397..28423768hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0016020cellular_componentmembrane
GO:0000254molecular_functionC-4 methylsterol oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9207.1.S1_at--394--1571Chr11:28396624..28396648 (25 bp)
AGCTCACAGTGGATACCATTTCCCA
LOC_Os11g48020
Os.9207.1.S1_at--531--8091Chr11:28396598..28396622 (25 bp)
GGAGCCCATCAAATTTCTTGCCACT
LOC_Os11g48020
Os.9207.1.S1_at--1096--9571Chr11:28396497..28396607 (25 bp)
TCTTGCCACTGTATGGAGGCTCCGA
LOC_Os11g48020
Os.9207.1.S1_at--844--911Chr11:28396481..28396503 (23 bp)
AGGCTCCGACTTTCATGACTATCAT
LOC_Os11g48020
Os.9207.1.S1_at--70--2031Chr11:28396428..28396452 (25 bp)
ACTACGCCTCTACTTTTGTTTACAT
LOC_Os11g48020
Os.9207.1.S1_at--633--8131Chr11:28396303..28396327 (25 bp)
GGACAAGGATTACCGCAATGCCAAG
LOC_Os11g48020
Os.9207.1.S1_at--364--2011Chr11:28396233..28396257 (25 bp)
ACTCTCTTTCTCTTTGTCCAAATCA
LOC_Os11g48020
Os.9207.1.S1_at--110--3211Chr11:28396202..28396226 (25 bp)
CAAGGGTTTGACATCTCGCAGTGGT
LOC_Os11g48020
Os.9207.1.S1_at--772--271Chr11:28396152..28396176 (25 bp)
ATAGGTGTCCTAGCCACAGGTATCT
LOC_Os11g48020
Os.9207.1.S1_at--1099--10311Chr11:28396098..28396122 (25 bp)
TTTCTTTCCCCAAATTCACTATACT
LOC_Os11g48020
Os.9207.1.S1_at--930--1371Chr11:28396064..28396088 (25 bp)
AGACCTTTGTGTTTCTGGAGGCCAC
LOC_Os11g48020
Target Sequence 
AGCTCACAGTGGATACCATTTCCCATGGAGCCCATCAAATTTCTTGCCACTGTATGGAGGCTCCGACTTTCATGACTATC
ATCACCGTGTGCTCTACACCAAATCAGGAAACTACGCCTCTACTTTTGTTTACATGGACTGGCTGTTTGGCACGGACAAG
GATTACCGCAATGCCAAGGCTATCGAGGAGAAAGACGGGAAGCATTTGTAAATTGTGGGGGCTACTCTCTTTCTCTTTGT
CCAAATCATCGAAACAAGGGTTTGACATCTCGCAGTGGTGATAGCATTGTGTTCATGGGAGGAAATAGGTGTCCTAGCCA
CAGGTATCTATCTCCTGAGATGATCCTACAGTTTAGATTTTCTTTCCCCAAATTCACTATACTATCATCATGAGACCTTT
GTGTTTCTGGAGGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis