Browse Element(s) Details


Os.9230.1.S1_x_at

Description gb:CB644074
DB_XREF= gi:29639065
DB_XREF=OSJNEb05B23.r
CLONE=OSJNEb05B23
TID=Os.9230.1
CNT=42
FEA=FLmRNA
TIER=Stack
STK=17
UG=Os.9230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dehydrogenase (OSJNBa0017E08.8), mRNA
FL= gb:AK068143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3537011/11Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os03g185101/11Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35310OsAffx.18524.1.S1_at6/1110+18552246..18553009expressed protein
LOC_Os10g35320OsAffx.18284.2.S1_x_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35320OsAffx.18284.2.S1_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35330OsAffx.30679.1.S1_at11/1110+18555866..18559122hypothetical protein
LOC_Os10g35330OsAffx.30679.2.S1_x_at2/1110+18555866..18559122hypothetical protein
LOC_Os10g35340OsAffx.6874.1.S1_at11/1110+18560871..18562227hypothetical protein
LOC_Os10g35350OsAffx.13097.1.S1_s_at11/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35350Os.46613.1.S2_at4/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35360OsAffx.7995.1.S1_x_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35360OsAffx.7995.1.S1_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35370Os.9230.1.S1_x_at11/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_x_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein
LOC_Os10g35390Os.17135.1.S1_at11/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.2.S1_x_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.1.A1_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35400Os.31312.2.S1_x_at1/1110+18593570..18596685retrotransposon protein, putative, unclassified
LOC_Os10g35412NANA10+18597495..18601748retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016630molecular_functionprotochlorophyllide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9230.1.S1_x_at--398--10691Chr10:18573713..18573737 (25 bp)
TTCCAGAAGTACATCACCAAGGGCT
LOC_Os10g35370
Os.9230.1.S1_x_at--638--4372Chr10:18573729..18573753 (25 bp)
CCAAGGGCTACGTCTCCGAGGAGGA
LOC_Os10g35370
Os.9230.1.S1_x_at--320--8471Chr10:18573768..18573792 (25 bp)
TGGCCCAGGTCGTCAGTGACCCCAG
LOC_Os10g35370
Os.9230.1.S1_x_at--259--1611Chr10:18573818..18573842 (25 bp)
AGCTGGAACAACAACTCGGCCTCGT
LOC_Os10g35370
Os.9230.1.S1_x_at--413--5391Chr10:18573910..18573934 (25 bp)
GAAGCTCGTCGGCTTGGCCGATCAC
LOC_Os10g35370
Os.9230.1.S1_x_at--431--4931Chr10:18573921..18573945 (25 bp)
GCTTGGCCGATCACGATCAGTGAGT
LOC_Os10g35370
Os.9230.1.S1_x_at--593--6111Chr10:18573948..18573972 (25 bp)
GAGTGATGTGCTATTGATTTTCGTC
LOC_Os10g35370
Os.9230.1.S1_x_at--97--3711Chr10:18573972..18573996 (25 bp)
CTAGGATTTTGCTGTGCTCTTCTTC
LOC_Os10g35370
Os.9230.1.S1_x_at--1123--5211Chr10:18574033..18574057 (25 bp)
GAATTTGTAGGACGCGTTTCTCACG
LOC_Os10g35370
Os.9230.1.S1_x_at--1015--6831Chr10:18574048..18574072 (25 bp)
GTTTCTCACGAATTACTTAGCTGTT
LOC_Os10g35370
Os.9230.1.S1_x_at--1069--8831Chr10:18574075..18574099 (25 bp)
TGATCAGCTTGATGTGTACGATATG
LOC_Os10g35370
Target Sequence 
TTCCAGAAGTACATCACCAAGGGCTACGTCTCCGAGGAGGAGGCCGGCAAGCGGCTGGCCCAGGTCGTCAGTGACCCCAG
CCTCACCAAGTCCGGGGTGTACTGGAGCTGGAACAACAACTCGGCCTCGTTCGAGAACCAGCTCTCCGAGGAGGCCTCCG
ATCCGGAGAAGGCCAAGAAGGTCTGGGAGCTCAGCGAGAAGCTCGTCGGCTTGGCCGATCACGATCAGTGAGTGAGAGTG
ATGTGCTATTGATTTTCGTCTAGGATTTTGCTGTGCTCTTCTTCTTCTTCTNCTCTCTACCAAGAAAGATCGATGGAGGA
GAATTTGTAGGACGCGTTTCTCACGAATTACTTAGCTGTTAATGATCAGCTTGATGTGTACGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9230.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis