Browse Element(s) Details


Os.9235.1.S1_at

Description gb:AK067974.1
DB_XREF= gi:32977992
TID=Os.9235.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126L13, full insert sequence.
FL= gb:AK058299.1 gb:AK067974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1051011/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10470Os.19187.1.S1_at11/112+5501165..5504378calcium-binding EF hand family protein, putative, expressed
LOC_Os02g10480Os.7758.1.S1_at11/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10480OsAffx.21601.1.S1_at1/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10490OsAffx.24187.1.S1_at11/112+5511434..5517919expressed protein
LOC_Os02g10500Os.51300.1.S1_x_at4/112+5519608..5519865hypothetical protein
LOC_Os02g10510Os.9235.1.S1_at11/112+5523998..5528722Ubiquitin family protein, expressed
LOC_Os02g10520Os.50238.1.S1_x_at11/112+5529956..5536941subtilisin-like protease, putative, expressed
LOC_Os02g10530Os.54540.1.S1_at10/112+5548055..5549534expressed protein
LOC_Os02g10540Os.25094.1.A1_at11/112+5550089..5552103Ribosomal protein L7/L12 C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9235.1.S1_at--206--8071Chr02:5527993..5528017 (25 bp)
GGAGAAGACTCCTGATGCGCCACCA
LOC_Os02g10510
Os.9235.1.S1_at--145--9911Chr02:5528026..5528151 (25 bp)
TACTACAGGTGCTCCAGCTGTGAAT
LOC_Os02g10510
Os.9235.1.S1_at--1046--8511Chr02:5528282..5528306 (25 bp)
TGGAACTTGGATTCGACCGGGCATC
LOC_Os02g10510
Os.9235.1.S1_at--525--4971Chr02:5528302..5528326 (25 bp)
GCATCCGTAATCCAAGCTCTCAAGT
LOC_Os02g10510
Os.9235.1.S1_at--826--6012Chr02:5528398..5528422 (25 bp)
GAGAGTTCTTTCTATTGCTCACGAC
LOC_Os02g10510
Os.9235.1.S1_at--443--251Chr02:5528465..5528489 (25 bp)
ATATCAGTATATCACCTCTTGGGCC
LOC_Os02g10510
Os.9235.1.S1_at--376--1751Chr02:5528478..5528502 (25 bp)
ACCTCTTGGGCCTTTGTGAAACTAG
LOC_Os02g10510
Os.9235.1.S1_at--678--2531Chr02:5528497..5528521 (25 bp)
AACTAGAACTTCTGTTTGGCCAATA
LOC_Os02g10510
Os.9235.1.S1_at--790--171Chr02:5528575..5528599 (25 bp)
ATTTTCTTGCCTTCAGTACCTGATA
LOC_Os02g10510
Os.9235.1.S1_at--180--3591Chr02:5528613..5528637 (25 bp)
CATTTCGATCTCATTTGTTTGCCAA
LOC_Os02g10510
Os.9235.1.S1_at--460--10111Chr02:5528663..5528687 (25 bp)
TATGGTCCTCACAGGTGAACTGCAA
LOC_Os02g10510
Target Sequence 
GGAGAAGACTCCTGATGCGCCACCACGAGCTCCTACTACAGGTGCTCCAGCTGTGAATCCTCCGCAACCACAGGGAGGAG
GAGATTTCGAAGCAAAAGTCACGAAACTGGTGGAACTTGGATTCGACCGGGCATCCGTAATCCAAGCTCTCAAGTTGTTC
AACGGGAATGAGGAGCAGGCTGCTGCTTTCTTGTTTGGTGGTTAGAGTCTTGTGATGATGATTTGAGAGAGTTCTTTCTA
TTGCTCACGACCCTTTCAAGGGCTGAACATTTTATACACAGTGATGGAGGGAGATATCAGTATATCACCTCTTGGGCCTT
TGTGAAACTAGAACTTCTGTTTGGCCAATACAGGCTTTTGGTTTAGAGATGATGGTTCATATTTCTCCTTCCATAGAAAA
CCCATTTTCTTGCCTTCAGTACCTGATACAAAGATCATGTGCATTTCGATCTCATTTGTTTGCCAATGATGTGAATTATT
GGTCTCATATATATGGTCCTCACAGGTGAACTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis