Browse Element(s) Details


Os.9249.1.S1_at

Description gb:AK063339.1
DB_XREF= gi:32973357
TID=Os.9249.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A10, full insert sequence.
FL= gb:AK063339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0451010/11RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g047309/11RNA polymerase Rpb5, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04440Os.11248.1.S1_at11/1112+1887941..18938702-isopropylmalate synthase B, putative, expressed
LOC_Os12g04450OsAffx.19490.2.S1_at11/1112+1895033..1897476Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04450OsAffx.19490.1.S1_at2/1112+1895033..1897476Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04460OsAffx.18669.1.S1_at11/1112+1898902..1899588Zinc finger, C3HC4 type family protein
LOC_Os12g04470OsAffx.31577.1.S1_s_at11/1112+1900516..1901956hypothetical protein
LOC_Os12g04480Os.23206.1.S1_at10/1112+1905049..1908150Cytochrome P450 family protein, expressed
LOC_Os12g04490NANA12+1911221..1912258hypothetical protein
LOC_Os12g04500Os.37430.1.S1_at5/1112+1914875..1916596Two-component response regulator ARR8, putative, expressed
LOC_Os12g04510Os.9249.1.S1_at10/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04510Os.37965.1.S1_at1/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04520Os.18691.1.S1_at5/1112+1921577..1925626mitochondrial L-galactono-1,4-lactone dehydrogenase, putative
LOC_Os12g04530OsAffx.19491.1.S1_at11/1112+1925876..1927095hypothetical protein
LOC_Os12g04540OsAffx.30819.1.S1_at11/1112+1928974..1930164hypothetical protein
LOC_Os12g04550OsAffx.22355.1.S1_at1/1112+1931308..1932151retrotransposon protein, putative, unclassified
LOC_Os12g04560OsAffx.19494.1.S1_at5/1112+1932481..1932809Calmodulin, putative
LOC_Os12g04570OsAffx.31579.1.S1_at10/1112+1933614..1935143hypothetical protein
LOC_Os12g04570Os.52519.1.S1_at5/1112+1933614..1935143hypothetical protein
LOC_Os12g04580OsAffx.19494.1.S1_at5/1112+1936309..1936617Calmodulin-related protein 97A, putative
LOC_Os12g04590Os.40368.1.A1_s_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590OsAffx.31580.1.S1_x_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590Os.55645.1.S1_at4/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9249.1.S1_at--558--7272Chr12:1918176..1918200 (25 bp)
GTCCAGGCTTGTTCTGATACTGCAG
LOC_Os12g04510
Os.9249.1.S1_at--376--8132Chr12:1917863..1918119 (25 bp)
GGACATATTCCAGGCCACAGATTTA
LOC_Os12g04510
Os.9249.1.S1_at--682--2012Chr12:1917826..1917850 (25 bp)
ACTAAGCATGTCCTGAAACCCAAGC
LOC_Os12g04510
Os.9249.1.S1_at--531--7511NONE
GTGGAAGACTCACAGTTGCCACGCA
NONE
Os.9249.1.S1_at--591--6692Chr12:1917203..1917227 (25 bp)
GTTGCCACGCATGCTAGAGACTGAT
LOC_Os12g04510
Os.9249.1.S1_at--1061--1352Chr12:1917188..1917212 (25 bp)
AGAGACTGATGCTGTTGCTCGCTAC
LOC_Os12g04510
Os.9249.1.S1_at--192--9112Chr12:1917173..1917197 (25 bp)
TGCTCGCTACTATGGCTTTGACAAG
LOC_Os12g04510
Os.9249.1.S1_at--35--5492Chr12:1917118..1917142 (25 bp)
GAACTTACTGGGAAGCGTGTGGCAT
LOC_Os12g04510
Os.9249.1.S1_at--11--2692Chr12:1917106..1917130 (25 bp)
AAGCGTGTGGCATACCGATGCGTCT
LOC_Os12g04510
Os.9249.1.S1_at--729--6332Chr12:1917090..1917114 (25 bp)
GATGCGTCTTCTGAGGGATCCATGT
LOC_Os12g04510
Os.9249.1.S1_at--1051--10691Chr12:1916864..1916888 (25 bp)
TTGCCCATTAAAGTTGTTCGGTAGT
LOC_Os12g04510
Target Sequence 
GTCCAGGCTTGTTCTGATACTGCAGAGCAAAATATTATCTAGAGCTAGAGAGGCTATCAAGGAGATCTTTAAATTTAAAG
TGGACATATTCCAGGCCACAGATTTACTGGTAAACATTACTAAGCATGTCCTGAAACCCAAGCATGAAGTGTTGAGTGCA
GATCAAAAGGCCAAGCTCCTCAAGGAATACAATGTGGAAGACTCACAGTTGCCACGCATGCTAGAGACTGATGCTGTTGC
TCGCTACTATGGCTTTGACAAGGGAACCGTGGTTAAAGTTANATATGACGGNGAACTTACTGGGAAGCGTGTGGCATACC
GATGCGTCTTCTGAGGGATCCATGTGTTCCTATGGATGAAGGTTGTAGTAAGTTATTAGCTACTAGTTGTTGATCTATCA
TCTATGTGACTCCTCTTTGCGTGATTTACCTGAATGTAGTTGGGAAACTTGCCCTGTTGCCCATGAAAGTTGGGAAATTT
ACCTGAATGTAGTTGGGAAACTTGCCCATTTAAGTTGGGAACTTTACCTGAATGCAGTTGGGAAACTTGCCCATTAAAGT
TGTTCGGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis