Browse Element(s) Details


Os.9284.1.S1_at

Description gb:AK112007.1
DB_XREF= gi:37988670
TID=Os.9284.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H08, full insert sequence.
FL= gb:AK112007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1037010/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10320Os.13596.1.S1_at10/113+5240825..5242784expressed protein
LOC_Os03g10330NANA3+5247261..5248408hypothetical protein
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein
LOC_Os03g10340Os.5282.1.S1_a_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.39003.1.S1_s_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S1_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S2_at10/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9284.1.S1_at--581--2731Chr03:5267333..5267356 (24 bp)
AAGCAAAGCTTCACAGACGTAATGG
LOC_Os03g10370
Os.9284.1.S1_at--139--7591Chr03:5267224..5267248 (25 bp)
GGGCTAAAGACAATCACTGACCGAG
LOC_Os03g10370
Os.9284.1.S1_at--634--2511Chr03:5267161..5267185 (25 bp)
AACATTGACTCTGTCATCGACTGGC
LOC_Os03g10370
Os.9284.1.S1_at--126--531Chr03:5267146..5267170 (25 bp)
ATCGACTGGCTCGTGAAGCACTCAA
LOC_Os03g10370
Os.9284.1.S1_at--827--1251Chr03:5267080..5267104 (25 bp)
AGATTCTCTCTTTTTGCATGTTGCG
LOC_Os03g10370
Os.9284.1.S1_at--673--1491Chr03:5267054..5267078 (25 bp)
AGCACTTGGCCTGTAAATTATGCAA
LOC_Os03g10370
Os.9284.1.S1_at--817--4871Chr03:5266984..5267008 (25 bp)
GCTTTGGCATTATATTGGCAGACTG
LOC_Os03g10370
Os.9284.1.S1_at--247--5731Chr03:5266964..5266988 (25 bp)
GACTGCATCTGGTATTGTGCACGCA
LOC_Os03g10370
Os.9284.1.S1_at--739--1331Chr03:5266918..5266942 (25 bp)
AGAGGTTCCACCCTCGTGTTGCATA
LOC_Os03g10370
Os.9284.1.S1_at--953--4951Chr03:5266898..5266922 (25 bp)
GCATACTTGCTTGGTGAATTTGAAA
LOC_Os03g10370
Os.9284.1.S1_at--1162--2851NONE
AAGTGAATTGCATCATCCTGGGAAA
NONE
Target Sequence 
AAGCAAAGCTTCACAGACGTAATGGGGCTAAAGACAATCACTGACCGAGAAGTGGCATGCTTCATGATATCATGCAAGAA
CTCGACAAACATTGACTCTGTCATCGACTGGCTCGTGAAGCACTCAAAAAAGAAGAATTGATCNTAAATTTTTAGCTTTT
GAAGTACGCAGATTCTCTCTTTTTGCATGTTGCGTAGCACTTGGCCTGTAAATTATGCAAGAGTTATTGTTGATCAGGGA
GGTTGTGTTCATAATTTTGTAANCCTGCTTTGGCATTATATTGGCAGACTGCATCTGGTATTGTGCACGCATNNGCTTCN
TTCCGACTTACAAGAGGTTCCACCCTCGTGTTGCATACTTGCTTGGTGAATTTGAAATTATGCGTGATTTGTGGATCATA
TTGTTTACTTTGGATGAAACTAAAGGGAGACAAAAATGTTGATAAATCGATGCTGCAATGAATTGCAAATTTGTGCTTGA
GACTCTGAGAGTAATAATATGTAGCATGAGAGAAATATTTAAACTANNNANNNNNNNCTTTTAAGTGAATTGCATCATCC
TGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis