Browse Element(s) Details

Os.9286.1.S1_s_at

Description

gb:AK101377.1
DB_XREF= gi:32986586
TID=Os.9286.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036C04, full insert sequence.
FL= gb:AK101377.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39750	11/11	Fatty acid elongase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39730	OsAffx.32233.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32259.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.26050.2.S2_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32256.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32255.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.26509.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.26050.37.S1_s_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32258.1.S1_x_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.26509.1.S1_s_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32234.1.S1_x_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.29056.1.S1_s_at	9/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32257.1.S1_x_at	8/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.47372.1.S1_x_at	7/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.47372.1.S1_at	7/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32260.1.S1_at	6/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32200.1.S1_x_at	2/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39740	OsAffx.30475.9.S1_s_at	10/11	6	+	23588446..23590352	ATP synthase beta chain, putative
LOC_Os06g39740	OsAffx.30475.5.S1_x_at	9/11	6	+	23588446..23590352	ATP synthase beta chain, putative
LOC_Os06g39740	OsAffx.30475.1.S1_s_at	9/11	6	+	23588446..23590352	ATP synthase beta chain, putative
LOC_Os06g39750	Os.9286.1.S1_at	11/11	6	+	23607741..23610099	Fatty acid elongase, putative, expressed
LOC_Os06g39750	Os.9286.1.S1_s_at	11/11	6	+	23607741..23610099	Fatty acid elongase, putative, expressed
LOC_Os06g39760	Os.15810.2.S1_x_at	11/11	6	+	23612191..23620156	Serine-threonine kinase receptor-associated protein, putative, expressed
LOC_Os06g39770	NA	NA	6	+	23621875..23623844	hypothetical protein
LOC_Os06g39780	Os.26811.1.A1_at	11/11	6	+	23631475..23633192	Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000038	biological_process	very-long-chain fatty acid metabolism
GO:0042335	biological_process	cuticle biosynthesis

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9286.1.S1_s_at--1093--19	1	Chr06:23609584..23609608 (25 bp)	ATTTGGATCTGGTTTCAAGTGCAAC	LOC_Os06g39750
Os.9286.1.S1_s_at--950--887	1	Chr06:23609671..23609695 (25 bp)	TGAGATTGACAACTTCCCGGTTGAA	LOC_Os06g39750
Os.9286.1.S1_s_at--86--905	1	Chr06:23609722..23609746 (25 bp)	TGCATGACATGAAATGCCTTGTTTG	LOC_Os06g39750
Os.9286.1.S1_s_at--474--303	1	Chr06:23609734..23609758 (25 bp)	AATGCCTTGTTTGTCTCAAGAGTAG	LOC_Os06g39750
Os.9286.1.S1_s_at--918--665	1	Chr06:23609774..23609798 (25 bp)	GTTGAGTGGCATTGTGCATTGGCAT	LOC_Os06g39750
Os.9286.1.S1_s_at--1012--751	1	Chr06:23609779..23609803 (25 bp)	GTGGCATTGTGCATTGGCATTGGTA	LOC_Os06g39750
Os.9286.1.S1_s_at--819--357	1	Chr06:23609836..23609860 (25 bp)	CATTTGCAATTGTTCAAGAGTTCTT	LOC_Os06g39750
Os.9286.1.S1_s_at--972--605	1	Chr06:23609853..23609877 (25 bp)	GAGTTCTTTGGTTTTCAGTTGTAGC	LOC_Os06g39750
Os.9286.1.S1_s_at--1037--787	2	Chr06:23609862..23609886 (25 bp)	GGTTTTCAGTTGTAGCATCTGTGAG	LOC_Os06g39750
Os.9286.1.S1_s_at--228--197	1	Chr06:23609905..23609929 (25 bp)	ACTGTAGCTGATTCAATTAGGTAGA	LOC_Os06g39750
Os.9286.1.S1_s_at--523--743	1	Chr06:23609938..23609962 (25 bp)	GTGTTTTCTTCACTTAGGGCTGTCT	LOC_Os06g39750

Target Sequence

ATTTGGATCTGGTTTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCNAACAGTGAANCCNGCGAAGGAGAAGAACCCCT
GGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATGCCTTGT
TTGTCTCAAGAGTAGTAAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCATTGGTAGGGCAGGAAGTTCATCTTCA
GGGTTCTAAATCCATTTGCAATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAA
AACTGTAGCTGATTCAATTAGGTAGAAAAAGGGNTGTGTTTTCTTCACTTAGGGCTGTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis