Browse Element(s) Details


Os.9287.1.S1_at

Description gb:AK058705.1
DB_XREF= gi:32968723
TID=Os.9287.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-C09, full insert sequence.
FL= gb:AK058705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1060811/1140S ribosomal protein S11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10570Os.15538.1.S1_at10/118+6212346..6217696bifunctional purine biosynthesis protein PurH containing protein, expressed
LOC_Os08g10580Os.53222.1.S1_at10/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10580OsAffx.24875.1.S1_at1/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10590OsAffx.29136.1.S1_x_at11/118+6225725..6227789expressed protein
LOC_Os08g10590Os.27409.1.A1_at10/118+6225725..6227789expressed protein
LOC_Os08g10600Os.8341.1.S1_at11/118+6231107..6235779UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os08g10604OsAffx.29137.1.S1_at11/118+6235817..6237381Pectinesterase family protein, expressed
LOC_Os08g10608Os.9287.1.S1_at11/118+6237621..624080540S ribosomal protein S11, putative, expressed
LOC_Os08g10612Os.57002.1.S1_at11/118+6245011..6245864expressed protein
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein
LOC_Os08g10630Os.54471.1.S1_at11/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10630Os.47413.1.S1_x_at1/118+6261481..6264553ZIP zinc/iron transport family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9287.1.S1_at--723--511Chr08:6238888..6238912 (25 bp)
ATCGTACGCAGAAACTACCTCCATT
LOC_Os08g10608
Os.9287.1.S1_at--729--2331Chr08:6238752..6238776 (25 bp)
AAAGAGGCACTCCAACATTCCAGCT
LOC_Os08g10608
Os.9287.1.S1_at--1133--6771Chr08:6238021..6238045 (25 bp)
GTTATTAAAGTCATCCCAGCTGGTT
LOC_Os08g10608
Os.9287.1.S1_at--180--1551Chr08:6237977..6238001 (25 bp)
AGCATTCATTGCAGCTTGAGCTTAT
LOC_Os08g10608
Os.9287.1.S1_at--729--10011Chr08:6237896..6237920 (25 bp)
TAGCTTGCTGTTTTGACCTTCTGTC
LOC_Os08g10608
Os.9287.1.S1_at--273--10611Chr08:6237878..6237902 (25 bp)
TTCTGTCTAGGTCCCTGGAGCATTT
LOC_Os08g10608
Os.9287.1.S1_at--829--8531Chr08:6237863..6237887 (25 bp)
TGGAGCATTTGCCACTCATCTGAAA
LOC_Os08g10608
Os.9287.1.S1_at--100--6831Chr08:6237820..6237844 (25 bp)
GTTTAGATCTCTGGTCATGCAAATT
LOC_Os08g10608
Os.9287.1.S1_at--955--2231Chr08:6237800..6237824 (25 bp)
AAATTGTGGTTGCTGTTGCCCTGTC
LOC_Os08g10608
Os.9287.1.S1_at--1054--3371Chr08:6237738..6237762 (25 bp)
CAGCCTGTTTGTTTCAGTCTTATGA
LOC_Os08g10608
Os.9287.1.S1_at--197--5611Chr08:6237678..6237702 (25 bp)
GAAATTGTTCACCATGTCACTGACA
LOC_Os08g10608
Target Sequence 
ATCGTACGCAGAAACTACCTCCATTTTGTGAAGAAATATCAGCGATATGAAAAGAGGCACTCCAACATTCCAGCTCACAT
TTCTCCATGCTTCCGTGTTAAGGAAGGNGACCATGTCATCATTGGCCAGTGCAGGCCTTTATCAAAAACTGTGAGGTTCA
ACGTTATTAAAGTCATCCCAGCTGGTTCCACAGGTGGTGGGAAGAAAGCATTCATTGCAGCTTGAGCTTATCGAAAATGC
CTAATCAATCACTAGTTAAATATACAAGTGTTCACTTAGAATTCTTCTAGCTTGCTGTTTTGACCTTCTGTCTAGGTCCC
TGGAGCATTTGCCACTCATCTGAAATGTATCCGTGCAAGTTTTGTTTAGATCTCTGGTCATGCAAATTGTGGTTGCTGTT
GCCCTGTCGTTGGGCCATGTTCCTTCTTTGAAGCAATAGCATCAACAGCCTGTTTGTTTCAGTCTTATGATGGTGATGTG
CGTTATCGTTGTTTTTTTTAAGCTGGAAATTGTTCACCATGTCACTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis