Browse Element(s) Details


Os.9323.1.S1_at

Description gb:AB026566.1
DB_XREF= gi:8671507
GEN=OsPBD1
TID=Os.9323.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9323 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPBD1 mRNA for beta 4 subunit of 20S proteasome, complete cds.
PROD=beta 4 subunit of 20S proteasome
FL= gb:AK099128.1 gb:AB026566.1 gb:AK061228.1 gb:AK060531.1 gb:AK105847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4893011/11Proteasome subunit beta type 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed
LOC_Os03g48950Os.56231.1.S1_at11/113+27827117..27831535expressed protein
LOC_Os03g48960NANA3+27832590..27832952hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9323.1.S1_at--730--5371Chr03:27809702..27809726 (25 bp)
GAAGAATCTCCACCTGTATCAGTTC
LOC_Os03g48930
Os.9323.1.S1_at--302--6631Chr03:27808352..27808376 (25 bp)
GTTGGTGCCTCTTTGTATTACATTG
LOC_Os03g48930
Os.9323.1.S1_at--99--8951Chr03:27808329..27808353 (25 bp)
TGACTACATCGCAACATTCCATAAG
LOC_Os03g48930
Os.9323.1.S1_at--412--2891Chr03:27808298..27808322 (25 bp)
AAGGGTGCCTTTGGGTATGGCTCCT
LOC_Os03g48930
Os.9323.1.S1_at--109--10611Chr03:27808271..27808295 (25 bp)
TTCTGTCTCTCGCTGATGGACAAGT
LOC_Os03g48930
Os.9323.1.S1_at--546--251Chr03:27808245..27808269 (25 bp)
ATATCGTCCAGACATGTCAGTCGAG
LOC_Os03g48930
Os.9323.1.S1_at--253--2251Chr03:27808186..27808210 (25 bp)
AAATTCGGCTCAGGTTGGTCGTTGC
LOC_Os03g48930
Os.9323.1.S1_at--627--7191Chr03:27808169..27808193 (25 bp)
GTCGTTGCTCCTCAAAACTTCATAA
LOC_Os03g48930
Os.9323.1.S1_at--1144--1131Chr03:27808088..27808112 (25 bp)
AGTCCACCGGAAGCTGCAACATCAG
LOC_Os03g48930
Os.9323.1.S1_at--124--1691Chr03:27808047..27808071 (25 bp)
AGCCTGAGTTGTATCTGCCATATGG
LOC_Os03g48930
Os.9323.1.S1_at--817--8891Chr03:27808019..27808043 (25 bp)
TGAACCTTAGGTTTCCGAGTACAAT
LOC_Os03g48930
Target Sequence 
GAAGAATCTCCACCTGTATCAGTTCCGCAACAACATCCCGCTCAGCACCGCCGCCACCGCCAATTTCACCCGCGGCGAGC
TCGCCACCGCCCTGCGGAAGAATCCGTACTATGTCAACGTGTTGCTTGCTGGATATGATTCGGATGTTGGTGCCTCTTTG
TATTACATTGACTACATCGCAACATTCCATAAGATCGAAAAGGGTGCCTTTGGGTATGGCTCCTACTTCTGTCTCTCGCT
GATGGACAAGTTATATCGTCCAGACATGTCAGTCGAGGAAGCTGTTGATCTTGTTGACAAGTGCATTAAAGAAATTCGGC
TCAGGTTGGTCGTTGCTCCTCAAAACTTCATAATCAAGATTGTTGATAAAGAGGGTGCTAGGGAGTATGCCAGGCGTGCA
TACACCGACAGTCCACCGGAAGCTGCAACATCAGAAGCTGCAACTGTAGCAGCCTGAGTTGTATCTGCCATATGGGTGTG
AACCTTAGGTTTCCGAGTACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis