Browse Element(s) Details


Os.9325.2.S1_at

Description gb:AK120561.1
DB_XREF= gi:37990184
TID=Os.9325.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132I06, full insert sequence.
FL= gb:AK120561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g279605/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27900Os.23773.1.A1_at11/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27900Os.23773.2.S1_at2/119+16962592..16964809D-xylose-proton symporter, putative, expressed
LOC_Os09g27910Os.51676.1.S1_at11/119+16969179..16970670Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27920OsAffx.6422.1.S1_at11/119+16971342..16972288hypothetical protein
LOC_Os09g27930OsAffx.30103.4.S1_s_at11/119+16972783..16974635UBiQuitin family member, putative, expressed
LOC_Os09g27940Os.54580.1.S1_at11/119+16976481..16977927Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27950Os.23468.1.A1_at11/119+16979036..16982866Avr9 elicitor response protein, putative, expressed
LOC_Os09g27960Os.9325.1.S1_at11/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27960Os.9325.2.S1_at5/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27970NANA9+16991505..16992747hypothetical protein
LOC_Os09g27980OsAffx.17941.2.S1_at10/119+16995554..16998348emp24/gp25L/p24 family protein, expressed
LOC_Os09g27990Os.8782.1.S1_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g27990Os.46749.1.S1_x_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g28000Os.27824.1.S1_at11/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28000OsAffx.12450.2.S1_x_at1/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28019Os.16158.1.S1_at11/119+17007755..17013359nucleoporin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9325.2.S1_at--37--31Chr09:16987408..16987432 (25 bp)
ATTGGACGTGTCACTCTGAGGACTA
LOC_Os09g27960
Os.9325.2.S1_at--590--731Chr09:16987374..16987398 (25 bp)
ATGTTGCAAGACTTCCGAGGGTGAA
LOC_Os09g27960
Os.9325.2.S1_at--491--5591Chr09:16987325..16987349 (25 bp)
GAAATCTTTTCTGCCAGTGTCAATG
LOC_Os09g27960
Os.9325.2.S1_at--1005--2251Chr09:16987284..16987308 (25 bp)
AAATATGCTCATTTCGTGTTGGGAA
LOC_Os09g27960
Os.9325.2.S1_at--808--5751Chr09:16987259..16987283 (25 bp)
GACGGGATGTCCATTTGTGCATAAC
LOC_Os09g27960
Os.9325.2.S1_at--572--5251Chr09:16987163..16987187 (25 bp)
GAATCTTCTGATGCTCTATCTTGAG
NONE
Os.9325.2.S1_at--172--8011Chr09:16987087..16987111 (25 bp)
GGATGGTGCTCCCTAACAAGTTATT
NONE
Os.9325.2.S1_at--733--9811Chr09:16987074..16987098 (25 bp)
TAACAAGTTATTACCACCTCGCCTA
NONE
Os.9325.2.S1_at--1024--9271Chr09:16987056..16987080 (25 bp)
TCGCCTAGGGCGTGACAAATTTCAA
NONE
Os.9325.2.S1_at--1131--51Chr09:16987032..16987056 (25 bp)
ATTGACTCCAACTGCAGATGCGGCT
NONE
Os.9325.2.S1_at--887--9171NONE
TGCCGCTGATTCTTTCAAGGTGCTT
NONE
Target Sequence 
ATTGGACGTGTCACTCTGAGGACTAAGGGCCAGAATGTTGCAAGACTTCCGAGGGTGAAAGGTCGTGGTGATAATGCTCC
GAAGAAATCTTTTCTGCCAGTGTCAATGTGATTTTGTGTACAAAAAATATGCTCATTTCGTGTTGGGAAGACGGGATGTC
CATTTGTGCATAACTGATTACTTTCTGAAATGATCCTTAACATTGGTACGTGTTTGTCATATTTTCTTCTGNAGTTTTGG
TTTCTGAATCTTCTGATGCTCTATCTTGAGGTTAGATCTGAAACTGAATTACTATGAGCTAAGAAACTGCCACAGTGCCG
TGGATGGTGCTCCCTAACAAGTTATTACCACCTCGCCTAGGGCGTGACAAATTTCAATTGACTCCAACTGCAGATGCGGC
TGCCGCTGATTCTTTCAAGGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9325.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis