Browse Element(s) Details


Os.9417.1.S1_at

Description gb:AK061438.1
DB_XREF= gi:32971456
TID=Os.9417.1
CNT=62
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.9417 (NCBI UniGene Cluster)
UG_TITLE=RNase S-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-B06, full insert sequence.
FL= gb:AK104553.1 gb:AK098949.1 gb:AK104221.1 gb:AK104656.1 gb:AY056038.1 gb:AK104454.1 gb:AK119186.1 gb:AK104599.1 gb:AK104509.1 gb:AK104888.1 gb:AK061438.1 gb:AY061961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3668011/11Ribonuclease T2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36620Os.7587.2.A1_at11/119+21132310..21133869expressed protein
LOC_Os09g36630Os.24040.1.S1_at11/119+21134009..21136312expressed protein
LOC_Os09g36640OsAffx.30156.1.S1_at11/119+21141767..21142906hypothetical protein
LOC_Os09g36650OsAffx.18014.1.S1_at11/119+21145536..21148594expressed protein
LOC_Os09g36660NANA9+21149216..21150900expressed protein
LOC_Os09g36670Os.49083.1.S1_x_at11/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36670Os.16549.2.S1_at1/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36680Os.9417.1.S1_at11/119+21155477..21157464Ribonuclease T2 family protein, expressed
LOC_Os09g36690Os.52946.1.S1_at4/119+21161762..21162475hypothetical protein
LOC_Os09g36690OsAffx.13417.1.S1_x_at2/119+21161762..21162475hypothetical protein
LOC_Os09g36700Os.12922.1.S1_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36700Os.47388.1.S1_s_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36710Os.3737.1.S1_at11/119+21171211..21173585Proteasome subunit alpha type 7, putative, expressed
LOC_Os09g36720OsAffx.6494.1.S1_at10/119+21174222..21174647hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009611biological_processresponse to wounding
GO:0009718biological_processanthocyanin biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0005576cellular_componentextracellular region
GO:0005622cellular_componentintracellular
GO:0004521molecular_functionendoribonuclease activity
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9417.1.S1_at--1048--4951Chr09:21156005..21156029 (25 bp)
GCATCAAGCCGGACTACCAACTGTA
LOC_Os09g36680
Os.9417.1.S1_at--443--1711Chr09:21155990..21156014 (25 bp)
ACCAACTGTACAACACGGCGTTCAT
LOC_Os09g36680
Os.9417.1.S1_at--123--1251Chr09:21155891..21155915 (25 bp)
AGTTGTACGAGATCTACCTCTGCGT
LOC_Os09g36680
Os.9417.1.S1_at--1145--2911Chr09:21155862..21155886 (25 bp)
AAGGACGCCAAGAGCTTCATCGACT
LOC_Os09g36680
Os.9417.1.S1_at--883--2091Chr09:21155763..21155787 (25 bp)
ACATCGGCTGCCAACATCGTGATGC
LOC_Os09g36680
Os.9417.1.S1_at--1096--7391Chr09:21155745..21155769 (25 bp)
GTGATGCCCACTGAAACTGTGCTGG
LOC_Os09g36680
Os.9417.1.S1_at--1043--5852Chr06:2117065..2117084 (20 bp)
GAGCCTTTAATTTGCTAGCTAAGCT
NONE
Os.9417.1.S1_at--179--10791Chr09:21155674..21155698 (25 bp)
TTGATCAACCTGTCCTAAGAGCATG
LOC_Os09g36680
Os.9417.1.S1_at--53--8631Chr09:21155625..21155649 (25 bp)
TGGGTGAATAATCGCGCAACTTTTA
LOC_Os09g36680
Os.9417.1.S1_at--428--331Chr09:21155601..21155625 (25 bp)
ATACATTGTTGTGCCCTCTGAATAA
LOC_Os09g36680
Os.9417.1.S1_at--611--9051Chr09:21155523..21155547 (25 bp)
TGCAGGTCTTGTGCACACCTGTGAG
LOC_Os09g36680
Target Sequence 
GCATCAAGCCGGACTACCAACTGTACAACACGGCGTTCATCAAGTGGGCAGTGAACCAGAAGCTGGGTGTGACACCAGGA
GTGCAGTGCAGGGACGGGCCATTTGGGAAGAAGCAGTTGTACGAGATCTACCTCTGCGTCGACAAGGACGCCAAGAGCTT
CATCGACTGCCCTGTCCTGCCCAACCTCAGCTGCCCTGCCGAGGTGCTCTTCCATCCGTTCCACACCTGGATGCTCAACA
CCACATCGGCTGCCAACATCGTGATGCCCACTGAAACTGTGCTGGCCTAATTAAGAGCCTTTAATTTGCTAGCTAAGCTG
CCATGATCTACTTGATCAACCTGTCCTAAGAGCATGTAGCATATGCTTAGCTTGTTGCTTTGGGTGAATAATCGCGCAAC
TTTTATACATTGTTGTGCCCTCTGAATAATATGTGCAGTACTATATATGAAGTATTGTACCGCATATGTTATGTATTACA
TGTGCAGGTCTTGTGCACACCTGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis