Browse Element(s) Details


Os.9439.1.S1_at

Description gb:AK102581.1
DB_XREF= gi:32987790
TID=Os.9439.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098B13, full insert sequence.
FL= gb:AK102581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5508011/11expressed protein
LOC_Os08g124101/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein
LOC_Os02g55110Os.21370.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55110OsAffx.24876.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55120Os.27119.1.S1_at10/112+33753148..33756764Translation initiation factor IF-3, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9439.1.S1_at--125--1231Chr02:33729382..33729406 (25 bp)
AGTTCTGCTGAAATGTTGCTCCCAC
LOC_Os02g55080
Os.9439.1.S1_at--599--2291Chr02:33729372..33729396 (25 bp)
AAATGTTGCTCCCACCACCAGACTT
LOC_Os02g55080
Os.9439.1.S1_at--1020--1711Chr02:33729356..33729380 (25 bp)
ACCAGACTTTGAGCCCGCGTCATAT
LOC_Os02g55080
Os.9439.1.S1_at--758--4532Chr08:7319370..7319428 (24 bp)
GCCCGCGTCATATCCCAAGGGATGG
LOC_Os08g12410
Os.9439.1.S1_at--670--2311Chr02:33728994..33729016 (23 bp)
AAAGGACCGTGAGATCAATGGCCTG
LOC_Os02g55080
Os.9439.1.S1_at--346--6451Chr02:33728982..33729006 (25 bp)
GATCAATGGCCTGAATGAACAGTTG
LOC_Os02g55080
Os.9439.1.S1_at--814--4191Chr02:33728947..33728971 (25 bp)
CCCGAGTGCTTGAGCTTCTACAAAA
LOC_Os02g55080
Os.9439.1.S1_at--649--991Chr02:33728751..33728775 (25 bp)
AGGTTCCAAGTTCTACACATCTTCG
LOC_Os02g55080
Os.9439.1.S1_at--561--6731Chr02:33728742..33728766 (25 bp)
GTTCTACACATCTTCGGATACCAGT
LOC_Os02g55080
Os.9439.1.S1_at--544--1691Chr02:33728723..33728747 (25 bp)
ACCAGTTTAAGAGTATTCCCAGATG
LOC_Os02g55080
Os.9439.1.S1_at--467--10651Chr02:33728708..33728732 (25 bp)
TTCCCAGATGTCTTTATCTTGTGTA
LOC_Os02g55080
Target Sequence 
AGTTCTGCTGAAATGTTGCTCCCACCACCAGACTTTGAGCCCGCGTCATATCCCAAGGGATGGCTGGTTGGCAAGAAACG
CAAGNTTGTGAATGTTGATNTGGTGGAGAGCATGAGGAGGATAGCAATCCAAGAAATGAACAGAAAGGACCGTGAGATCA
ATGGCCTGAATGAACAGTTGGAAGAANNCNCCCGAGTGCTTGAGCTTCTACAAAAGCAGCTCGCAGATGAGCGTAAGAAG
CGAACGGAGATAGAGAAGGAAAATTCCATGCTTCATGAGCAGGTATCTATGCTGATGAACATGCTCGATGAAAATGAAGC
CNTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCAAGGTTCCAAGTTCT
ACACATCTTCGGATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis