Browse Element(s) Details


Os.9537.1.S1_at

Description gb:AK067673.1
DB_XREF= gi:32977691
TID=Os.9537.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116N21, full insert sequence.
FL= gb:AK067673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0142011/11ribosomal protein L10 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01370OsAffx.18618.1.S1_at10/1111+226459..230596expressed protein
LOC_Os11g01370Os.8201.1.S1_x_at4/1111+226459..230596expressed protein
LOC_Os11g01380OsAffx.18617.1.S1_at11/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01380Os.5886.1.S1_at8/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01390OsAffx.19445.1.S1_at11/1111+244190..244639EF hand family protein
LOC_Os11g01400OsAffx.31538.2.S1_x_at11/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.31538.2.S1_at10/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.21149.1.S1_x_at1/1111+246082..249718hypothetical protein
LOC_Os11g01410OsAffx.31539.2.S1_at11/1111+249808..250788Ammonium transporter 2, putative
LOC_Os11g01420Os.9537.1.S1_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.9537.1.S1_s_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.24578.1.A1_at1/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01430OsAffx.18620.1.S1_at11/1111+254163..255783hypothetical protein
LOC_Os11g01430Os.23748.1.A1_at6/1111+254163..255783hypothetical protein
LOC_Os11g01450NANA11+261625..263495phosphatidate cytidylyltransferase family protein, expressed
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9537.1.S1_at--964--2331Chr11:251539..251563 (25 bp)
AAAGCTATTCGTGTCTTATTAACAG
LOC_Os11g01420
Os.9537.1.S1_at--260--92Chr12:266706..266729 (24 bp)
ATTCGTGTCTTATTAACAGGGTGGC
NONE
Os.9537.1.S1_at--154--7152Chr12:266700..266724 (25 bp)
GTCTTATTAACAGGGTGGCACATCT
NONE
Os.9537.1.S1_at--325--9812Chr12:266693..266717 (25 bp)
TAACAGGGTGGCACATCTACGCAGC
NONE
Os.9537.1.S1_at--972--1052Chr12:266689..266713 (25 bp)
AGGGTGGCACATCTACGCAGCTAAC
NONE
Os.9537.1.S1_at--977--7512Chr12:266686..266710 (25 bp)
GTGGCACATCTACGCAGCTAACATG
NONE
Os.9537.1.S1_at--1053--5112Chr12:266683..266707 (25 bp)
GCACATCTACGCAGCTAACATGCTT
NONE
Os.9537.1.S1_at--558--452Chr12:266680..266703 (24 bp)
ATCTACGCAGCTAACATGCTTCATT
NONE
Os.9537.1.S1_at--459--9951Chr11:251503..251527 (25 bp)
TACGCAGCTAACATGCTTCATTTGT
LOC_Os11g01420
Os.9537.1.S1_at--105--5071Chr11:251500..251524 (25 bp)
GCAGCTAACATGCTTCATTTGTTGG
LOC_Os11g01420
Os.9537.1.S1_at--1067--9812Chr11:251495..251519 (25 bp)
TAACATGCTTCATTTGTTGGTATTT
LOC_Os11g01420
Target Sequence 
AAAGCTATTCGTGTCTTATTAACAGGGTGGCACATCTACGCAGCTAACATGCTTCATTTGTTGGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis