Browse Element(s) Details


Os.9540.2.S1_at

Description gb:AU085729
DB_XREF= gi:7332383
DB_XREF=AU085729
CLONE=C52077
TID=Os.9540.2
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.9540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0095C07.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4215011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42170Os.46615.1.S1_at11/1110+22350399..22352513expressed protein
LOC_Os10g42180Os.46883.1.S1_at11/1110+22352591..22355066Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os10g42190Os.11604.2.S1_at11/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.11604.1.S1_at10/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.49252.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.46673.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42196Os.23268.1.S1_at11/1110+22369432..22377421expressed protein
LOC_Os10g42196Os.23268.1.S2_at11/1110+22369432..22377421expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9540.2.S1_at--1093--3251Chr10:22346559..22346583 (25 bp)
CAACGGTACAAGACAGTGCAGCGGT
LOC_Os10g42150
Os.9540.2.S1_at--663--5071Chr10:22346542..22346566 (25 bp)
GCAGCGGTGCAAAATATTTATCCTA
LOC_Os10g42150
Os.9540.2.S1_at--159--10431Chr10:22346525..22346549 (25 bp)
TTATCCTAATACTTCTTTGCCCATG
LOC_Os10g42150
Os.9540.2.S1_at--370--311Chr10:22346470..22346493 (24 bp)
ATACCTTCTCTCAGATATTGACGGG
LOC_Os10g42150
Os.9540.2.S1_at--878--6951Chr10:22346319..22346343 (25 bp)
GTAGCATGGACAGTTGCTGCAATCT
LOC_Os10g42150
Os.9540.2.S1_at--26--1571Chr10:22346267..22346291 (25 bp)
AGCTTTTGCTTTTGTCGAAGTGTAA
LOC_Os10g42150
Os.9540.2.S1_at--123--1551Chr10:22346204..22346228 (25 bp)
AGCATTTTGTGCATCTCTGAACTTG
LOC_Os10g42150
Os.9540.2.S1_at--189--2811Chr10:22346120..22346144 (25 bp)
AAGTTACAGTCTTGCTAGCTCTAGC
LOC_Os10g42150
Os.9540.2.S1_at--970--4851Chr10:22346107..22346131 (25 bp)
GCTAGCTCTAGCACAAATGTCACTT
LOC_Os10g42150
Os.9540.2.S1_at--872--10511Chr10:22346084..22346108 (25 bp)
TTCACAAGCAAGACAACCTTCCTCT
LOC_Os10g42150
Os.9540.2.S1_at--1153--1731Chr10:22346069..22346093 (25 bp)
ACCTTCCTCTGTTACTCACTGAAAA
LOC_Os10g42150
Target Sequence 
CAACGGTACAAGACAGTGCAGCGGTGCAAAATATTTATCCTAATACTTCTTTGCCCATGGAAGAATTGTCTGAACCATAC
ATGGCCATCAATACCTTCTCTCAGATATTGACGGGGCCAATTACAGATGATGTTTTGGCTGATTTCTAGTAGCATGGACA
GTTGCTGCAATCTGAAATATAACAGATTGTTTAGGGGGATAGCTTTTGCTTTTGTCGAAGTGTAAAGTTCAGGGAATTGC
AGAATTGCATTTCTGAATAGCAGAGCATTTTGTGCATCTCTGAACTTGCAACATTCAGAATTACCTTTTATTCAATTCCA
AACAATTTACAACACAATGACAATCACAAGTTACAGTCTTGCTAGCTCTAGCACAAATGTCACTTCACAAGCAAGACAAC
CTTCCTCTGTTACTCACTGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9540.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis