Browse Element(s) Details


Os.9556.1.S1_at

Description gb:AK070555.1
DB_XREF= gi:32980579
TID=Os.9556.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061E14, full insert sequence.
FL= gb:AK070555.1 gb:AK105095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4406011/11nodulin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44010OsAffx.20111.1.S1_at11/1112+27267698..27269080expressed protein
LOC_Os12g44020Os.15738.1.S1_at11/1112+27270290..27273545expressed protein
LOC_Os12g44020OsAffx.9512.1.S1_x_at3/1112+27270290..27273545expressed protein
LOC_Os12g44030OsAffx.9512.1.S1_x_at1/1112+27276298..27277590expressed protein
LOC_Os12g44040Os.27105.1.S1_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.27105.1.S2_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.9552.1.S1_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44050Os.53424.1.S1_at10/1112+27282857..27283690expressed protein
LOC_Os12g44060Os.9556.1.S1_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44060Os.9556.1.S2_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44070Os.56205.1.S1_at11/1112+27296483..27298336nodulin family protein, putative, expressed
LOC_Os12g44080OsAffx.32183.1.S1_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44080OsAffx.32183.1.S1_s_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44090Os.23212.1.S1_at11/1112+27306635..27310516leucine-rich repeat family protein, putative, expressed
LOC_Os12g44100Os.52621.1.S1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.52621.1.S1_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_x_at11/1112+27312540..27317046POT family protein, expressed
LOC_Os12g44100Os.51071.1.A1_at10/1112+27312540..27317046POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9556.1.S1_at--804--5771Chr12:27292985..27293009 (25 bp)
GACGAGCACCTGAGCTGCAATTCTG
LOC_Os12g44060
Os.9556.1.S1_at--952--1591Chr12:27292997..27293021 (25 bp)
AGCTGCAATTCTGCTGCTCGATCAG
LOC_Os12g44060
Os.9556.1.S1_at--496--9491Chr12:27293006..27293030 (25 bp)
TCTGCTGCTCGATCAGAAGATCTGA
LOC_Os12g44060
Os.9556.1.S1_at--891--2851Chr12:27293090..27293114 (25 bp)
AAGTGCTATACTACAACATTGCAAC
LOC_Os12g44060
Os.9556.1.S1_at--902--2191Chr12:27293102..27293126 (25 bp)
ACAACATTGCAACACCCACATTTAG
LOC_Os12g44060
Os.9556.1.S1_at--104--1811Chr12:27293115..27293139 (25 bp)
ACCCACATTTAGAGGGATAATTGAC
LOC_Os12g44060
Os.9556.1.S1_at--104--7951Chr12:27293129..27293153 (25 bp)
GGATAATTGACCCACATTTTCAACT
LOC_Os12g44060
Os.9556.1.S1_at--711--151Chr12:27293144..27293168 (25 bp)
ATTTTCAACTTATCTGGGCTAGCCC
LOC_Os12g44060
Os.9556.1.S1_at--257--10511Chr12:27293147..27293171 (25 bp)
TTCAACTTATCTGGGCTAGCCCGAT
LOC_Os12g44060
Os.9556.1.S1_at--1023--2411Chr12:27293183..27293207 (25 bp)
AAAAACACTTTTTATGGCTGGCTAT
LOC_Os12g44060
Os.9556.1.S1_at--392--5571Chr12:27293213..27293237 (25 bp)
GAAAGATTCAATCGGCTGTTCAACT
LOC_Os12g44060
Target Sequence 
GACGAGCACCTGAGCTGCAATTCTGCTGCTCGATCAGAAGATCTGAGAGATAGAGGAGCAAAAAGGACTCCTTTTTTCTT
TATAACTGTTCTTTTAGTTTTTAAGAAGTGCTATACTACAACATTGCAACACCCACATTTAGAGGGATAATTGACCCACA
TTTTCAACTTATCTGGGCTAGCCCGATTCCTCCAAAACAAAAACACTTTTTATGGCTGGCTATAAGGGGAAAGATTCAAT
CGGCTGTTCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis