Browse Element(s) Details


Os.9633.1.S1_a_at

Description gb:AK109391.2
DB_XREF= gi:42821706
TID=Os.9633.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Tic20 protein (OJ1092_A07.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-H03, full insert sequence.
FL= gb:AK100091.1 gb:AK109391.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3811011/11Tic20, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein
LOC_Os07g38090Os.14948.1.S1_at11/117+22839292..22842243Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g38100OsAffx.20985.1.S1_at11/117+22843358..22848027TB2/DP1, HVA22 family protein, expressed
LOC_Os07g38110Os.9633.1.S1_a_at11/117+22849663..22852221Tic20, putative, expressed
LOC_Os07g38120Os.12666.1.S1_at11/117+22856901..22860879Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g38130Os.10733.1.S1_at11/117+22872563..22874011Polygalacturonase inhibitor 1 precursor, putative, expressed
LOC_Os07g38140Os.28645.1.S1_at10/117+22876832..22877600expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9633.1.S1_a_at--513--2131Chr07:22850209..22850233 (25 bp)
ACAGTGTACTTCTTTGTCGTGAGAC
LOC_Os07g38110
Os.9633.1.S1_a_at--805--5971Chr07:22850189..22850213 (25 bp)
GAGACGGAAGTGGTCGCCGCACTTT
LOC_Os07g38110
Os.9633.1.S1_a_at--140--5151Chr07:22850110..22850134 (25 bp)
GCAACAATGTGCACCTGGATGCCCA
LOC_Os07g38110
Os.9633.1.S1_a_at--836--7971Chr07:22850094..22850118 (25 bp)
GGATGCCCAGCATCGTGTATCAGGG
LOC_Os07g38110
Os.9633.1.S1_a_at--160--3451Chr07:22850059..22850083 (25 bp)
CAGTATTTCTGGATGGCTATTGCTT
LOC_Os07g38110
Os.9633.1.S1_a_at--479--71Chr07:22850041..22850065 (25 bp)
ATTGCTTTCATACAGATCTTCACAG
LOC_Os07g38110
Os.9633.1.S1_a_at--924--431Chr07:22850026..22850050 (25 bp)
ATCTTCACAGTGCTCGAGTGCATGC
LOC_Os07g38110
Os.9633.1.S1_a_at--657--6351Chr07:22850001..22850025 (25 bp)
GATGCGCTCTTGCTGGGATGTACCC
LOC_Os07g38110
Os.9633.1.S1_a_at--997--8731Chr07:22849983..22850007 (25 bp)
TGTACCCGAATGTCCCTTTCATATC
LOC_Os07g38110
Os.9633.1.S1_a_at--466--4311Chr07:22849969..22849993 (25 bp)
CCTTTCATATCTCACACGGCATTTA
LOC_Os07g38110
Os.9633.1.S1_a_at--533--1931Chr07:22849954..22849978 (25 bp)
ACGGCATTTATCCATTCTGATCTGA
LOC_Os07g38110
Target Sequence 
ACAGTGTACTTCTTTGTCGTGAGACGGAAGTGGTCGCCGCACTTTCTAAGGTTCCATGTCATCTTGGCTATCCTCCTGGA
CACTGGCTCCCAAGCAGTGGCAACAATGTGCACCTGGATGCCCAGCATCGTGTATCAGGGGANGCCTATGCAGTATTTCT
GGATGGCTATTGCTTTCATACAGATCTTCACAGTGCTCGAGTGCATGCGATGCGCTCTTGCTGGGATGTACCCGAATGTC
CCTTTCATATCTCACACGGCATTTATCCATTCTGATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9633.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis