Browse Element(s) Details


Os.9641.1.S1_x_at

Description gb:AK120262.1
DB_XREF= gi:37989885
TID=Os.9641.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.32 (B1144G04.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046L18, full insert sequence.
FL= gb:AK120262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4879011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48750OsAffx.23718.1.S1_x_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.2.S1_x_at4/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48760Os.4649.1.S1_at11/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48760OsAffx.9292.1.S1_at10/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48770Os.6731.1.S1_at10/111+28292556..2829496560S ribosomal protein L37a, putative, expressed
LOC_Os01g48780OsAffx.25095.1.S1_at10/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.3.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.5.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed
LOC_Os01g48800Os.29907.1.S1_at11/111+28322809..28324394expressed protein
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9641.1.S1_x_at--362--9651Chr01:28316597..28316621 (25 bp)
TCAGAAACGGGCTTCCTACTTCAAA
LOC_Os01g48790
Os.9641.1.S1_x_at--341--1891Chr01:28316642..28316666 (25 bp)
ACGTTGAGAATCCTTGGCACTCGTC
LOC_Os01g48790
Os.9641.1.S1_x_at--189--5111Chr01:28316658..28316682 (25 bp)
GCACTCGTCCACTTCTAAATGCAAG
LOC_Os01g48790
Os.9641.1.S1_x_at--392--1331Chr01:28316707..28316731 (25 bp)
AGAGGAACCATGGTGCTGTCTTCCC
LOC_Os01g48790
Os.9641.1.S1_x_at--898--4731Chr01:28316721..28316745 (25 bp)
GCTGTCTTCCCATGAGAATGCTCGA
LOC_Os01g48790
Os.9641.1.S1_x_at--201--8851Chr01:28316787..28316811 (25 bp)
TGATCATGCGTGTGTTACTACCTCT
LOC_Os01g48790
Os.9641.1.S1_x_at--820--9311Chr01:28316837..28316861 (25 bp)
TCCCTCGTCTATTTTTCAGCTTGGA
LOC_Os01g48790
Os.9641.1.S1_x_at--855--3671Chr01:28316876..28316900 (25 bp)
CTTTTTGCCTTATGTCATGCCTTTT
LOC_Os01g48790
Os.9641.1.S1_x_at--4--7071Chr01:28316933..28316957 (25 bp)
GTAAGCAGTCTAGTTTGATCCAAAG
LOC_Os01g48790
Os.9641.1.S1_x_at--850--6731Chr01:28316964..28316988 (25 bp)
GTTCATCATGGTTAGGCGTGTTTCA
LOC_Os01g48790
Os.9641.1.S1_x_at--292--1031Chr01:28317128..28317152 (25 bp)
AGGTACTGTCCTTTGTATCACAATC
LOC_Os01g48790
Target Sequence 
TCAGAAACGGGCTTCCTACTTCAAACAATTAACTTGCTGTGTGAAACGTTGAGAATCCTTGGCACTCGTCCACTTCTAAA
TGCAAGCGGAAAAAGAGGAACCAAAGGAAAAGAGGAACCATGGTGCTGTCTTCCCATGAGAATGCTCGATGACTGGGAAG
AGGTTACAAGACAACTAACTAGATATCTACTGATCATGCGTGTGTTACTACCTCTGCCGCTAGCCGCTAACGCTCAATTC
TCCCTCGTCTATTTTTCAGCTTGGAGGGAAGAATTTTTCCTTTTTGCCTTATGTCATGCCTTTTTTTATTTGTCTAATAA
TACTGCTGGGGTCTTTGTAAGCAGTCTAGTTTGATCCAAAGAAGCAAGTTCATCATGGTTAGGCGTGTTTCAGTGAAGGT
TTGTAGGTGGTTGTGGTTGGGTTGTCATTTGGGGTTGTAGAGGTTTATTTAAGACAAGTTTTAGGTACTGACATTGAAGG
TGGGAAAAAGAAAAGGAATAAGTTTTTGGACTTGCTTTACATTATTGTTTTAGGTACTGTCCTTTGTATCACAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9641.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis