Browse Element(s) Details


Os.9665.1.S1_at

Description gb:AK111098.1
DB_XREF= gi:32996307
TID=Os.9665.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G10, full insert sequence.
FL= gb:AK111098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2519011/11Pollen allergen family protein, expressed
LOC_Os04g261906/11Pollen allergen family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25150Os.12319.1.S1_x_at9/114+14510075..14510750Pollen allergen family protein, expressed
LOC_Os04g25160Os.25407.1.S1_at11/114+14518959..14519650Pollen allergen family protein, expressed
LOC_Os04g25170OsAffx.22711.4.A1_x_at1/114+14523263..14523700transposon protein, putative, unclassified
LOC_Os04g25180OsAffx.26159.1.S1_at10/114+14530956..14531884hypothetical protein
LOC_Os04g25190Os.9665.1.S1_at11/114+14534210..14534900Pollen allergen family protein, expressed
LOC_Os04g25210OsAffx.26141.4.S1_x_at11/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25210OsAffx.26141.4.S1_at11/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25210OsAffx.26141.3.S1_x_at7/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25220OsAffx.32072.1.S1_x_at7/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.2.S1_x_at4/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.1.S1_at3/114+14555944..14556321hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9665.1.S1_at--1016--9512Chr04:15244806..15244830 (25 bp)
TCTAGAGCTTGTCACTAATGTTGCC
LOC_Os04g26190
Os.9665.1.S1_at--254--1352Chr04:15244809..15244833 (25 bp)
AGAGCTTGTCACTAATGTTGCCATC
LOC_Os04g26190
Os.9665.1.S1_at--24--5932Chr04:15244810..15244834 (25 bp)
GAGCTTGTCACTAATGTTGCCATCT
LOC_Os04g26190
Os.9665.1.S1_at--519--4932Chr04:15244812..15244836 (25 bp)
GCTTGTCACTAATGTTGCCATCTCT
LOC_Os04g26190
Os.9665.1.S1_at--1093--3612Chr04:15244813..15244836 (24 bp)
CTTGTCACTAATGTTGCCATCTCTG
LOC_Os04g26190
Os.9665.1.S1_at--827--10811Chr04:14534674..14534698 (25 bp)
TTGTCACTAATGTTGCCATCTCTGA
LOC_Os04g25190
Os.9665.1.S1_at--220--6092Chr04:15245020..15245044 (25 bp)
GAGTACAAGAGTGGAATCCAACTCT
LOC_Os04g26190
Os.9665.1.S1_at--694--8672Chr04:15245201..15245225 (25 bp)
TGTGTCCTTCCAAAATATTGCTGCG
NONE
Os.9665.1.S1_at--929--7452Chr04:15245202..15245226 (25 bp)
GTGTCCTTCCAAAATATTGCTGCGG
NONE
Os.9665.1.S1_at--1009--7252Chr04:15245204..15245228 (25 bp)
GTCCTTCCAAAATATTGCTGCGGAG
NONE
Os.9665.1.S1_at--640--3632Chr04:15245207..15245231 (25 bp)
CTTCCAAAATATTGCTGCGGAGCTG
NONE
Target Sequence 
TCTAGAGCTTGTCACTAATGTTGCCATCTCTGAGGTGGAGGTCAAGGAGAAGGGCGGCAAGGACTGGGTGGCGCTCAAGG
ANTCGTCGTCTAACACCTGGACGCTCAAAAGTGAGTCGCCGCTCAAGGGCCCCTTCTCTGTCCGCTTCCTTGTCAAGAAT
GGNGGCTACCGTGTCGTCGANGATGTCATCCCTGNAAGCTTTACAGCTGGCTCTGAGTACAAGAGTGGAATCCAACTCTA
AGTAACAGACATGTGTACTCTTGNTGGGTCACATGCGAAATATGAACANCTAAATAATCCTCTCTTAAAAGAGATCGTGT
CATGNTTGAGTGAGCAAATAATTATTATTTTTGGNTATTTTGNTGTAATAGGCCNGATGGCAACATAAGGCATACATGTG
TCCTTCCAAAATATTGCTGCGGAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis