Browse Element(s) Details


Os.9700.1.S1_at

Description gb:AK061225.1
DB_XREF= gi:32971243
TID=Os.9700.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H02, full insert sequence.
FL= gb:AK061225.1 gb:AK099366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2897010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28950OsAffx.29407.2.S1_at9/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.29407.1.S1_at4/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.32068.1.S1_at1/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28960OsAffx.29408.1.S1_at10/118+17587876..17592203expressed protein
LOC_Os08g28980Os.26049.1.S2_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980Os.26049.1.S1_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980OsAffx.26666.1.S1_x_at1/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28970Os.9700.1.S1_at10/118+17597590..17599043expressed protein
LOC_Os08g28990Os.41695.15.S1_s_at11/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.2.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.3.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.5.S1_x_at9/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.4.S1_x_at1/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g29000OsAffx.19542.3.S1_x_at4/118+17616312..17621988retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9700.1.S1_at--28--5071Chr08:17598186..17598210 (25 bp)
GCACCTCCAAGGTTTTCATGACGGA
LOC_Os08g28970
Os.9700.1.S1_at--1044--571NONE
ATCCACTCTGCAAGGTACTATGTCC
NONE
Os.9700.1.S1_at--751--8571Chr08:17598627..17598651 (25 bp)
TGGATTCTGATGTCCCGGCAAGCTA
LOC_Os08g28970
Os.9700.1.S1_at--67--5171Chr08:17598644..17598668 (25 bp)
GCAAGCTACATCCAGCATGCTGTGA
LOC_Os08g28970
Os.9700.1.S1_at--861--9271Chr08:17598669..17598693 (25 bp)
TCCGAGGAGGCAACTTCTGGTCAAT
LOC_Os08g28970
Os.9700.1.S1_at--909--5611Chr08:17598718..17598742 (25 bp)
GACAACGCTGCTGATGTGGATCTTC
LOC_Os08g28970
Os.9700.1.S1_at--210--7971Chr08:17598735..17598759 (25 bp)
GGATCTTCGGGCCAATACCAATGTT
LOC_Os08g28970
Os.9700.1.S1_at--135--4291Chr08:17598762..17598786 (25 bp)
CCTGCTCGGTGTTGATGGTGTTCAT
LOC_Os08g28970
Os.9700.1.S1_at--1050--5991Chr08:17598859..17598883 (25 bp)
GAGAGCTCTGGCATCTACAGTGGTT
LOC_Os08g28970
Os.9700.1.S1_at--1155--3391Chr08:17598902..17598926 (25 bp)
CAGAATCCGATTCTCAGTAACCCGG
LOC_Os08g28970
Os.9700.1.S1_at--75--7811Chr08:17598925..17598949 (25 bp)
GGTCTTGTCTCCTGTAACTTTTTCA
LOC_Os08g28970
Target Sequence 
GCACCTCCAAGGTTTTCATGACGGAGCTCGTCTACGGCGACCGCACCCAGGCGACGGCCACCGTGAAGTACATCTCCCTT
CTCGTCNTGCTTCCTCGTCTCCTTCACTTGCTTCATCCACTCTGCAAGGTACTATGTCCAAGCCAGNTTCCTAATAACCA
CGCTGGATTCTGATGTCCCGGCAAGCTACATCCAGCATGCTGTGATCCGAGGAGGCAACTTCTGGTCAATGGGGCTCCGT
GCACTCTACTTCGCGACAACGCTGCTGATGTGGATCTTCGGGCCAATACCAATGTTCACCTGCTCGGTGTTGATGGTGTT
CATCCTGCACCTGCTGGACAGCAATTCCCTGCCATTGCACAACCATCAGTTCACAATTAGAAAACGGCATGATCAGAGAG
CTCTGGCATCTACAGTGGTTACAAGGCACCCCAGCCCTCAGAATCCGATTCTCAGTAACCCGGTCTTGTCTCCTGTAACT
TTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis