Browse Element(s) Details


Os.9713.1.S1_at

Description gb:AK121601.1
DB_XREF= gi:37991224
TID=Os.9713.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040P21, full insert sequence.
FL= gb:AK121601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5169011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51690Os.9713.2.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.9713.1.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.48625.1.A1_s_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51700Os.8524.1.S1_at11/115+29577307..29580245Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed
LOC_Os05g51710Os.47379.1.S1_at11/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51710Os.54251.1.S1_at1/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51720OsAffx.27408.1.S1_at11/115+29585174..29585566hypothetical protein
LOC_Os05g51730NANA5+29588091..29589721retrotransposon protein, putative, unclassified
LOC_Os05g51740OsAffx.14902.1.A1_at5/115+29593042..29598509retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9713.1.S1_at--765--5311Chr05:29576267..29576291 (25 bp)
GAAGGTGAAGAGAAACTTTGGCAGA
LOC_Os05g51690
Os.9713.1.S1_at--361--3671Chr05:29576282..29576494 (25 bp)
CTTTGGCAGAAAGATCAAGTATGCT
LOC_Os05g51690
Os.9713.1.S1_at--1118--3211Chr05:29576487..29576509 (23 bp)
CAAGTATGCTTGCAGGAAGGCTCTT
LOC_Os05g51690
Os.9713.1.S1_at--396--6911Chr05:29576488..29576512 (25 bp)
GTATGCTTGCAGGAAGGCTCTTGCA
LOC_Os05g51690
Os.9713.1.S1_at--452--9071Chr05:29576491..29576515 (25 bp)
TGCTTGCAGGAAGGCTCTTGCAGAC
LOC_Os05g51690
Os.9713.1.S1_at--171--10731Chr05:29576494..29576518 (25 bp)
TTGCAGGAAGGCTCTTGCAGACAGC
LOC_Os05g51690
Os.9713.1.S1_at--379--5011Chr05:29576496..29576520 (25 bp)
GCAGGAAGGCTCTTGCAGACAGCCA
LOC_Os05g51690
Os.9713.1.S1_at--776--911Chr05:29576502..29576526 (25 bp)
AGGCTCTTGCAGACAGCCAGCCAAG
LOC_Os05g51690
Os.9713.1.S1_at--55--9051Chr05:29576509..29576533 (25 bp)
TGCAGACAGCCAGCCAAGAGTGCGA
LOC_Os05g51690
Os.9713.1.S1_at--499--4411Chr05:29576517..29576541 (25 bp)
GCCAGCCAAGAGTGCGAGGGAGGTT
LOC_Os05g51690
Os.9713.1.S1_at--668--6111Chr05:29576526..29576550 (25 bp)
GAGTGCGAGGGAGGTTTGCCAAGAT
LOC_Os05g51690
Target Sequence 
GAAGGTGAAGAGAAACTTTGGCAGAAAGATCAAGTATGCTTGCAGGAAGGCTCTTGCAGACAGCCAGCCAAGAGTGCGAG
GGAGGTTTGCCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis