Browse Element(s) Details


Os.9760.1.S1_at

Description gb:AK070347.1
DB_XREF= gi:32980371
TID=Os.9760.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054E24, full insert sequence.
FL= gb:AK104748.1 gb:AK070347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5017411/11Caleosin related protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50130Os.12035.1.S1_at11/112+30619799..30620996hydrolase, NUDIX family protein, expressed
LOC_Os02g50140OsAffx.24805.1.S1_s_at11/112+30625495..30626800ABA-induced protein, putative
LOC_Os02g50150OsAffx.24806.1.S1_at11/112+30630253..30632610Caleosin related protein
LOC_Os02g50150OsAffx.28165.1.S1_at1/112+30630253..30632610Caleosin related protein
LOC_Os02g50174OsAffx.12573.1.S1_s_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174Os.9760.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.12573.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.26548.1.S1_at3/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50200Os.56026.1.A1_at10/112+30649418..3065051633 kDa secretory protein, putative, expressed
LOC_Os02g50210Os.7229.1.S1_at10/112+30652557..30653352Erwinia induced protein 2, putative, expressed
LOC_Os02g50220OsAffx.24807.1.S1_at10/112+30655447..30658484expressed protein
LOC_Os02g50220Os.50196.2.S1_x_at1/112+30655447..30658484expressed protein
LOC_Os02g50230Os.39981.1.S1_at11/112+30663348..30667188Peptidase family M48 containing protein, expressed
LOC_Os02g50240Os.7909.1.S1_at11/112+30668911..30672790Glutamine synthetase root isozyme 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005509molecular_functioncalcium ion binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9760.1.S1_at--190--6571Chr02:30647888..30647912 (25 bp)
GATTCAAGCGCCTATGATTCTGAAG
LOC_Os02g50174
Os.9760.1.S1_at--357--10771Chr02:30648086..30648110 (25 bp)
TTGAGGAGATATTCGCCAAGCACGC
LOC_Os02g50174
Os.9760.1.S1_at--465--2771Chr02:30648112..30648136 (25 bp)
AAGACCGTGCCTGATGCTCTGACAT
LOC_Os02g50174
Os.9760.1.S1_at--580--8111Chr02:30648138..30648162 (25 bp)
GGACGAGATAGACGAGCTGCTTCAA
LOC_Os02g50174
Os.9760.1.S1_at--196--5711Chr02:30648181..30648307 (25 bp)
GACTACACTGGATGGGTCGCAGCAT
LOC_Os02g50174
Os.9760.1.S1_at--417--7231Chr02:30648298..30648322 (25 bp)
GTCGCAGCATCGTCAGAGTGGAAGA
LOC_Os02g50174
Os.9760.1.S1_at--949--2211Chr02:30648344..30648368 (25 bp)
ACAAGGACGGCCTTCTTCGCAAGGA
LOC_Os02g50174
Os.9760.1.S1_at--1106--5951Chr02:30648377..30648401 (25 bp)
GAGAAGTCTACGATGGAAGCCTGTT
LOC_Os02g50174
Os.9760.1.S1_at--794--5411Chr02:30648392..30648416 (25 bp)
GAAGCCTGTTTACCAAGCTGGCGGC
LOC_Os02g50174
Os.9760.1.S1_at--63--7971Chr02:30648464..30648488 (25 bp)
GGATCATCTCCATTGATTCTCCTGA
LOC_Os02g50174
Os.9760.1.S1_at--757--6231Chr02:30648613..30648637 (25 bp)
GATCGTTTAGTTCTGTCCTTTTTTG
LOC_Os02g50174
Target Sequence 
GATTCAAGCGCCTATGATTCTGAAGGAAGGTTCGTTGCTGAAAAGTTTGAGGAGATATTCGCCAAGCACGCCAAGACCGT
GCCTGATGCTCTGACATCGGACGAGATAGACGAGCTGCTTCAAGCGAACCGCAAGCCCGGTGACTACACTGGATGGGTCG
CAGCATCGTCAGAGTGGAAGATTCTGTACAAGATCGGCAAGGACAAGGACGGCCTTCTTCGCAAGGAGGCCGTGCGAGAA
GTCTACGATGGAAGCCTGTTTACCAAGCTGGCGGCGGCAAGGATAAACGACGAAAACCAAGCATGATTGGTGACAGCTGA
TGGGATCATCTCCATTGATTCTCCTGATTAAGCATCTCAAATCATGTGCCACTGTGATATGAGAACGATTGAGATGATGT
CTGAACACAAAAAGATAGTCATGCAAGATAGAAGTATGAACAAGTGTGGACAGAATCTGCAGATGGGGATGGATCGTTTA
GTTCTGTCCTTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis