Browse Element(s) Details


Os.9835.2.S1_at

Description gb:AK062894.1
DB_XREF= gi:32972912
TID=Os.9835.2
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506B12.30 (P0506B12.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E07, full insert sequence.
FL= gb:AK104675.1 gb:AK069181.1 gb:AK062894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6202011/11UDP-D-glucuronate decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61970Os.6681.1.S1_at10/111+36197920..36200047Lung seven transmembrane receptor family protein, expressed
LOC_Os01g61980Os.6795.1.S1_at11/111+36207873..36209261expressed protein
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g62070Os.10121.1.S1_at11/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_x_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0019305biological_processdTDP-rhamnose biosynthesis
GO:0042732biological_processD-xylose metabolism
GO:0000139cellular_componentGolgi membrane
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
GO:0048040molecular_functionUDP-glucuronate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9835.2.S1_at--665--371Chr01:36224459..36224483 (25 bp)
ATCAAGACGATCATATCCTTCTCGT
LOC_Os01g62020
Os.9835.2.S1_at--35--4251Chr01:36224485..36224509 (25 bp)
CCGGATCTGCACATACCTTTGATTT
LOC_Os01g62020
Os.9835.2.S1_at--270--6531Chr01:36224505..36224529 (25 bp)
GATTTGCTTACATTCATGTCGACTT
LOC_Os01g62020
Os.9835.2.S1_at--235--131Chr01:36224516..36224540 (25 bp)
ATTCATGTCGACTTGATTTGATCTT
LOC_Os01g62020
Os.9835.2.S1_at--1100--5111Chr01:36224597..36224621 (25 bp)
GCACATAAGTGGTCCAGATCAAGCT
LOC_Os01g62020
Os.9835.2.S1_at--863--6451Chr01:36224613..36224637 (25 bp)
GATCAAGCTCGTATGCTGAAACTTT
LOC_Os01g62020
Os.9835.2.S1_at--988--6511Chr01:36224652..36224676 (25 bp)
GATTCAAGTGAACCCTGGATCCTAA
LOC_Os01g62020
Os.9835.2.S1_at--222--8571Chr01:36224667..36224691 (25 bp)
TGGATCCTAAATTTGCCTCCTTTTT
LOC_Os01g62020
Os.9835.2.S1_at--103--4471Chr01:36224681..36224705 (25 bp)
GCCTCCTTTTTTCAATATCAAGTGG
LOC_Os01g62020
Os.9835.2.S1_at--409--6971Chr01:36224775..36224799 (25 bp)
GTAGCCGGTTCTACTGTAGTGCCAT
LOC_Os01g62020
Os.9835.2.S1_at--155--10071Chr01:36224791..36224815 (25 bp)
TAGTGCCATTTATCTACAGGATTTT
LOC_Os01g62020
Target Sequence 
ATCAAGACGATCATATCCTTCTCGTCCCGGATCTGCACATACCTTTGATTTGCTTACATTCATGTCGACTTGATTTGATC
TTCTCCTTTATTTTTTTTTATTGGGTTGGTGGGTGGGAGATATGCTTGAAGCAAACTAGCACATAAGTGGTCCAGATCAA
GCTCGTATGCTGAAACTTTTGGTGGTTGGTTTGGATTCAAGTGAACCCTGGATCCTAAATTTGCCTCCTTTTTTCAATAT
CAAGTGGTTGTTCTGTTGAGATCTTAGGAAGACGCGATAGATTTGTTAGTTGTGATGCACAGGTGGTAAATGTGGGGTAG
CCGGTTCTACTGTAGTGCCATTTATCTACAGGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9835.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis