Browse Element(s) Details


Os.9950.1.S1_at

Description gb:AK105317.1
DB_XREF= gi:32990526
TID=Os.9950.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F06, full insert sequence.
FL= gb:AK105317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1424011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14180OsAffx.15421.1.S1_at11/116+7914592..7915553expressed protein
LOC_Os06g14190Os.17665.1.S1_x_at11/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14190Os.17665.2.S1_at8/116+7919598..7923038NF-X1 type zinc finger family protein, expressed
LOC_Os06g14200OsAffx.27630.1.S1_at11/116+7924698..7926407Zinc finger, C3HC4 type family protein
LOC_Os06g14210NANA6+7928550..7929332expressed protein
LOC_Os06g14220Os.53026.1.S1_at10/116+7932985..7934242sulfotransferase family protein, putative, expressed
LOC_Os06g14230NANA6+7936672..7936926hypothetical protein
LOC_Os06g14240Os.9950.1.S1_at11/116+7939955..7940681Hsp20/alpha crystallin family protein, expressed
LOC_Os06g14250Os.35344.18.S1_x_at10/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14250Os.35344.3.S1_x_at9/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14250OsAffx.22940.5.S1_x_at3/116+7944053..7950099transposon protein, putative, Mutator sub-class
LOC_Os06g14260Os.46882.1.S1_at2/116+7952936..7955232Protein kinase domain containing protein
LOC_Os06g14270OsAffx.27632.1.S1_at11/116+7959790..7960936hypothetical protein
LOC_Os06g14280OsAffx.27633.1.S1_at11/116+7962962..796674533 kDa secretory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9950.1.S1_at--215--9091Chr06:7940461..7940485 (25 bp)
TGCTCAGGATCAACGTCCCGGGACT
LOC_Os06g14240
Os.9950.1.S1_at--836--9711Chr06:7940452..7940476 (25 bp)
TCAACGTCCCGGGACTGGGCAAGGA
LOC_Os06g14240
Os.9950.1.S1_at--471--7171Chr06:7940162..7940186 (25 bp)
GTCTCCAGCAAGCTCTGATCCTGAT
LOC_Os06g14240
Os.9950.1.S1_at--678--2691Chr06:7940153..7940177 (25 bp)
AAGCTCTGATCCTGATCAAGCCCGA
LOC_Os06g14240
Os.9950.1.S1_at--1035--8831Chr06:7940141..7940165 (25 bp)
TGATCAAGCCCGACCCTTTGTGCAT
LOC_Os06g14240
Os.9950.1.S1_at--828--5811Chr06:7940130..7940154 (25 bp)
GACCCTTTGTGCATTGTGCGCAAGT
LOC_Os06g14240
Os.9950.1.S1_at--833--31Chr06:7940118..7940142 (25 bp)
ATTGTGCGCAAGTGTTTCTGTGTTT
LOC_Os06g14240
Os.9950.1.S1_at--363--10611Chr06:7940103..7940127 (25 bp)
TTCTGTGTTTGTGAACTGTAGTCGA
LOC_Os06g14240
Os.9950.1.S1_at--1025--7551Chr06:7940048..7940072 (25 bp)
GGGCGAATGTGTATTGGAAGTCCAA
LOC_Os06g14240
Os.9950.1.S1_at--995--8191Chr06:7940033..7940057 (25 bp)
GGAAGTCCAAATCTTAATGTTGAAA
LOC_Os06g14240
Os.9950.1.S1_at--815--9731Chr06:7939957..7939981 (25 bp)
TAATTAATAAAGGTGGGTCTTCTGC
LOC_Os06g14240
Target Sequence 
TGCTCAGGATCAACGTCCCGGGACTGGGCAAGGACGACGTCAAGGTGCAGGTGGAGGACGGCAACGTGCTCACCGTGAGG
GGCGCGGCGCCGCACGCGGCGGCGGAGAAGGAGAGGGAGAGGGAGAAGGATGTGGTGTGGCACGTGGCGGAGCGCGGGCG
GCCGGAGTTCGCGAGGGAGGTGGNGCTGCCGGCGGAGGTGAGGGTGGAGCAGATCAGGGCCAGCGTCGACAACGGCGTGC
TCACCGTCGTCGTGCCCAAGGAGCCCGCGCCGGCCCGGCCCAGGACCAGGCCCATCGCCGTCTCCAGCAAGCTCTGATCC
TGATCAAGCCCGACCCTTTGTGCATTGTGCGCAAGTGTTTCTGTGTTTGTGAACTGTAGTCGATTATAGCNAACCATCAG
TCGAATGTTGTGAAGGGCGAATGTGTATTGGAAGTCCAAATCTTAATGTTGAAAATTTTGAAAAATTTTAGAGGTTTGAA
TTACTAGTATATCTATGTAATAATCTAATTAATAAAGGTGGGTCTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis