Browse Element(s) Details


Os.9980.2.S1_x_at

Description gb:NM_186042.1
DB_XREF= gi:34899169
GEN=P0453E03.19
TID=Os.9980.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9980 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative 4-alpha-glucanotransferase (P0453E03.19), mRNA.
PROD=putative 4-alpha-glucanotransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4679010/11glycoside hydrolase family 77 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein
LOC_Os07g46750Os.138.1.S1_at11/117+27940062..27942618EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os07g46760Os.27317.1.S1_at11/117+27943484..27946410TBP-binding protein, putative, expressed
LOC_Os07g46770Os.31724.1.S1_at11/117+27947234..27948959pentatricopeptide, putative, expressed
LOC_Os07g46780Os.21410.2.S1_x_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780Os.21410.1.S1_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780OsAffx.21636.1.S1_x_at2/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46790Os.9980.2.S1_x_at10/117+27958851..27966077glycoside hydrolase family 77 protein, putative, expressed
LOC_Os07g46800NANA7+27968170..27968616hypothetical protein
LOC_Os07g46810OsAffx.16738.1.S1_at11/117+27980212..27981050expressed protein
LOC_Os07g46820Os.34737.2.S1_x_at11/117+27981530..27986262RNA recognition motif family protein, expressed
LOC_Os07g46830OsAffx.22529.1.S1_s_at11/117+27989502..27990897NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000023biological_processmaltose metabolism
GO:0005976biological_processpolysaccharide metabolism
GO:0005983biological_processstarch catabolism
GO:0005829cellular_componentcytosol
GO:0004134molecular_function4-alpha-glucanotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9980.2.S1_x_at--752--4271Chr07:27964674..27964777 (25 bp)
CCTGTGTTCACCCTGTTATGCAAGA
LOC_Os07g46790
Os.9980.2.S1_x_at--442--6591Chr07:27964792..27964816 (25 bp)
GATTGCGTATCCAGAGAATGCCCAG
LOC_Os07g46790
Os.9980.2.S1_x_at--239--7871Chr07:27964836..27964860 (25 bp)
GGTATTCCATCTCAGTATAGCTACA
LOC_Os07g46790
Os.9980.2.S1_x_at--1099--291Chr07:27964852..27965017 (25 bp)
ATAGCTACATGACGGTTTGTGCTCC
LOC_Os07g46790
Os.9980.2.S1_x_at--241--6871Chr07:27965007..27965031 (25 bp)
GTTTGTGCTCCGTCATGTCATGATT
LOC_Os07g46790
Os.9980.2.S1_x_at--120--731Chr07:27965026..27965050 (25 bp)
ATGATTGCTCCACATTACGTGCTTG
LOC_Os07g46790
Os.9980.2.S1_x_at--1117--5411Chr07:27965074..27965098 (25 bp)
GAAGCCGTTTCTACCAGACTGTAAT
LOC_Os07g46790
Os.9980.2.S1_x_at--821--8571Chr07:27965099..27965123 (25 bp)
TGGTAGTGATGACGAGCCGCCATCT
LOC_Os07g46790
Os.9980.2.S1_x_at--1015--2011Chr07:27965286..27965306 (21 bp)
ACTACAGGACCTGCTTGCACTTAAA
LOC_Os07g46790
Os.9980.2.S1_x_at--16--8931Chr07:27965348..27965372 (25 bp)
TGACCCAACTAACCCGAAGCATTAT
LOC_Os07g46790
Os.9980.2.S1_x_at--493--6051NONE
GAGATTCCGGCTACATGTGACATTG
NONE
Target Sequence 
CCTGTGTTCACCCTGTTATGCAAGAACTTGGATTGATTGGATTGCGTATCCAGAGAATGCCCAGTGAACCAAACTTGGAA
TTTGGTATTCCATCTCAGTATAGCTACATGACGGTTTGTGCTCCGTCATGTCATGATTGCTCCACATTACGTGCTTGGTG
GGAAGAAGATGGAGGAAGAAGAAGCCGTTTCTACCAGACTGTAATTGGTAGTGATGACGAGCCGCCATCTCGCTGCACCC
CAGAAGTAGCGAACTTTATTGTTAAGCAGCATTTTGATGCTCCATCAATGTGGGCAATCTTCCCACTACAGGACCTGCTT
GCACTTAAAGACAAGTACACCACAAGACCAGCAAAAGAGGAAACAATCAATGACCCAACTAACCCGAAGCATTATTGGAG
ATTCCGGCTACATGTGACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9980.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis