Browse Element(s) Details


Os.9996.2.S1_at

Description gb:AK060466.1
DB_XREF= gi:32970484
TID=Os.9996.2
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C12, full insert sequence.
FL= gb:AK101789.1 gb:AK060466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1098011/11pyruvate kinase family protein, expressed
LOC_Os10g101301/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10920OsAffx.31532.1.S1_at11/1111+6026010..6029909carboxyl-terminal peptidase, putative, expressed
LOC_Os11g10920Os.41248.3.A1_at1/1111+6026010..6029909carboxyl-terminal peptidase, putative, expressed
LOC_Os11g10930OsAffx.18791.1.S1_at10/1111+6031123..6032236hypothetical protein
LOC_Os11g10940OsAffx.18792.1.S1_x_at11/1111+6034635..6035188hypothetical protein
LOC_Os11g10940OsAffx.30922.1.S1_s_at11/1111+6034635..6035188hypothetical protein
LOC_Os11g10940OsAffx.30922.1.S1_x_at4/1111+6034635..6035188hypothetical protein
LOC_Os11g10950NANA11+6040065..6041559hypothetical protein
LOC_Os11g10960NANA11+6044464..6044850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.2.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.1.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.5.S1_x_at3/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.3.S1_x_at1/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10980Os.9996.2.S1_at11/1111+6054813..6061259pyruvate kinase family protein, expressed
LOC_Os11g10990Os.9996.1.S1_at11/1111+6060779..6062265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os11g11000Os.11947.1.S1_a_at10/1111+6063705..6069244ABC1 family protein, expressed
LOC_Os11g11010OsAffx.30923.1.S1_at10/1111+6070865..6072074hypothetical protein
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004743molecular_functionpyruvate kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9996.2.S1_at--836--10711Chr11:6060687..6060711 (25 bp)
TTGCTTTCTTTCTTGTTTGACATGA
LOC_Os11g10980
Os.9996.2.S1_at--405--3111Chr11:6060724..6060748 (25 bp)
AATAGGGAAGGCCAATTGTGCTGTT
LOC_Os11g10980
Os.9996.2.S1_at--1041--7291Chr11:6060741..6060765 (25 bp)
GTGCTGTTTGGCAATTTACCCATTT
LOC_Os11g10980
Os.9996.2.S1_at--851--10331Chr11:6060764..6060788 (25 bp)
TTTAGGTCCATACTTGCTTTTTCAA
LOC_Os11g10980
Os.9996.2.S1_at--817--2771Chr11:6060800..6060824 (25 bp)
AAGAGCCTATTTACACATTGCAACA
LOC_Os11g10980
Os.9996.2.S1_at--547--7872Chr11:6060849..6060873 (25 bp)
GGATACAGGGACATTTGGTTACTTG
LOC_Os11g10980
Os.9996.2.S1_at--962--7331Chr11:6060882..6060906 (25 bp)
GTGCAGTACTTATTTCGCATTACAT
LOC_Os11g10980
Os.9996.2.S1_at--108--10471Chr11:6060901..6060925 (25 bp)
TTACATCATGATACACCCGTACGTA
LOC_Os11g10980
Os.9996.2.S1_at--254--8751Chr11:6060953..6060977 (25 bp)
TGTACCTGAAAATTTCTTCTTCCTG
LOC_Os11g10980
Os.9996.2.S1_at--1077--7111Chr11:6061075..6061099 (25 bp)
GTCATGGCCTGGTCGCTGAGGTCCA
LOC_Os11g10980
Os.9996.2.S1_at--878--3851Chr11:6061090..6061114 (25 bp)
CTGAGGTCCATGTTGCGGCCGCCGA
LOC_Os11g10980
Target Sequence 
TTGCTTTCTTTCTTGTTTGACATGATATTGAGACTAGAATAGGGAAGGCCAATTGTGCTGTTTGGCAATTTACCCATTTT
AGGTCCATACTTGCTTTTTCAATAATTTCATTCAAGAGCCTATTTACACATTGCAACAATCCAATTTTGTGGACAAAATA
CAGGATACAGGGACATTTGGTTACTTGGTGTGGATGTGCAGTACTTATTTCGCATTACATCATGATACACCCGTACGTAT
AGCAAACAACATCTTGAGAGTGTATATGTACCTGAAAATTTCTTCTTCCTGNGCATGAANTGAATAATCTAGTACTGCNC
NNTGGAGAAGACNGNGNGTANATNAGGCAGAAGACGCAGAAGATGATNATNCCGATNTCNATGGTNAGCGCGGTCATGGC
CTGGTCGCTGAGGTCCATGTTGCGGCCGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9996.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis