Browse Element(s) Details


OsAffx.10033.2.S1_at

Description tigr:9631.m03726
TID=OsAffx.10033.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3881011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38764NANA3+21480450..21486038retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38780NANA3+21488298..21489899hypothetical protein
LOC_Os03g38790Os.54422.1.S1_at10/113+21496612..21499175Uncharacterised protein family containing protein, expressed
LOC_Os03g38790Os.40082.1.A1_x_at3/113+21496612..21499175Uncharacterised protein family containing protein, expressed
LOC_Os03g38800Os.54109.1.S1_at11/113+21499440..21501420ATPase, AAA family protein, expressed
LOC_Os03g38800Os.38396.1.A1_at1/113+21499440..21501420ATPase, AAA family protein, expressed
LOC_Os03g38804NANA3+21502261..21502578hypothetical protein
LOC_Os03g38810OsAffx.10033.2.S1_at11/113+21504891..21506184hypothetical protein
LOC_Os03g38810OsAffx.10033.1.S1_at2/113+21504891..21506184hypothetical protein
LOC_Os03g38820Os.35344.18.S1_x_at8/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38820Os.35344.3.S1_x_at7/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38820OsAffx.22940.5.S1_x_at2/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38830Os.54774.1.S1_x_at2/113+21520137..21522348retrotransposon, putative, centromere-specific
LOC_Os03g38830Os.54774.1.S1_at2/113+21520137..21522348retrotransposon, putative, centromere-specific
LOC_Os03g38840Os.54774.1.S1_x_at2/113+21524034..21524856retrotransposon, putative, centromere-specific
LOC_Os03g38840Os.54774.1.S1_at2/113+21524034..21524856retrotransposon, putative, centromere-specific
LOC_Os03g38850Os.46012.2.S1_x_at6/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850Os.27088.1.A1_x_at5/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850Os.46012.3.S1_x_at4/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850OsAffx.10222.1.S1_x_at1/113+21527603..21535195retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10033.2.S1_at--699--8132Chr12:1761711..1761734 (24 bp)
GGACATCGAGCTTGAGCCTGAGACC
NONE
OsAffx.10033.2.S1_at--753--1533Chr12:1761718..1761742 (25 bp)
AGCTTGAGCCTGAGACCGGCCGGCA
NONE
OsAffx.10033.2.S1_at--530--1631Chr03:21505708..21505732 (25 bp)
AGCGTGATGCCGTGTTGGCGGAGGT
LOC_Os03g38810
OsAffx.10033.2.S1_at--449--4713Chr12:1761799..1761823 (25 bp)
GCTGGCTGGACTACGAGCTTGAGAT
NONE
OsAffx.10033.2.S1_at--209--9954Chr12:1761810..1761832 (23 bp)
TACGAGCTTGAGATGCGCGGGCGCA
NONE
OsAffx.10033.2.S1_at--861--7351Chr03:21506021..21506041 (21 bp)
GGGCGCAACCCAGATTACTTAGCAG
LOC_Os03g38810
OsAffx.10033.2.S1_at--687--5151Chr03:21506021..21506045 (25 bp)
GCAACCCAGATTACTTAGCAGATAA
LOC_Os03g38810
OsAffx.10033.2.S1_at--831--9891Chr03:21506032..21506056 (25 bp)
TACTTAGCAGATAAGCCTCCTCTTT
LOC_Os03g38810
OsAffx.10033.2.S1_at--1004--10011Chr03:21506036..21506060 (25 bp)
TAGCAGATAAGCCTCCTCTTTCTCC
LOC_Os03g38810
OsAffx.10033.2.S1_at--750--3651Chr03:21506051..21506075 (25 bp)
CTCTTTCTCCTGATCCCGGTTCGAA
LOC_Os03g38810
OsAffx.10033.2.S1_at--1142--8691Chr03:21506124..21506148 (25 bp)
TGTGCCGCTGCCCTTCATCAGTGGT
LOC_Os03g38810
Target Sequence 
GGACATCGAGCTTGAGCCTGAGACCGGCCGGCACGACGGGAACAAAAGTCGAGCTAGCGTGATGCCGTGTTGGCGGAGGT
TGACCCCGTGCTGGCTGGACTACGAGCTTGAGATGCGCGGGCGCAACCCAGATTACTTAGCAGATAAGCCTCCTCTTTCT
CCTGATCCCGGTTCGAATCACCCACTCTACCACGTGGCCCCGCTCTCCTCCCTCCAGGACCCCCGTGTGCCGCTGCCCTT
CATCAGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10033.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis