Browse Element(s) Details


OsAffx.10261.2.A1_at

Description tigr:9629.m01108
TID=OsAffx.10261.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1153011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11490OsAffx.11009.1.S1_at11/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11490Os.27860.3.S1_at1/111+6182424..6183119Zinc finger, C3HC4 type family protein
LOC_Os01g11500OsAffx.23199.1.S1_at11/111+6185320..6186021Zinc finger, C3HC4 type family protein
LOC_Os01g11510OsAffx.23200.1.S1_at11/111+6188733..6190547SRF-type transcription factor family protein
LOC_Os01g11520Os.7731.1.S1_at11/111+6195960..6197201Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11530OsAffx.10261.2.A1_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.10626.4.A1_s_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530OsAffx.31752.1.S1_at2/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.40531.1.A1_x_at1/111+6205940..6207490hypothetical protein
LOC_Os01g11550Os.2066.1.S1_a_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11550Os.2066.2.S1_x_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10261.2.A1_at--146--101513Chr12:12691586..12691610 (25 bp)
TATACAAAAAGATCCCTGAGGTTTC
NONE
OsAffx.10261.2.A1_at--906--32514Chr12:12691590..12691614 (25 bp)
CAAAAAGATCCCTGAGGTTTCTAAG
NONE
OsAffx.10261.2.A1_at--520--23313Chr12:12691593..12691617 (25 bp)
AAAGATCCCTGAGGTTTCTAAGAAT
NONE
OsAffx.10261.2.A1_at--364--10291Chr01:6206661..6206685 (25 bp)
TTTCTAAGAATCAACCCGCCGACCT
LOC_Os01g11530
OsAffx.10261.2.A1_at--16--9511Chr01:6206663..6206687 (25 bp)
TCTAAGAATCAACCCGCCGACCTAG
LOC_Os01g11530
OsAffx.10261.2.A1_at--122--40911Chr12:12691627..12691646 (20 bp)
CGACCTAGCCTCATATGTCAGCGGA
NONE
OsAffx.10261.2.A1_at--586--1751Chr01:6206682..6207036 (25 bp)
ACCTAGCCTCATATGTCAGCGGAAG
LOC_Os01g11530
OsAffx.10261.2.A1_at--719--9991Chr01:6206685..6207039 (25 bp)
TAGCCTCATATGTCAGCGGAAGGGT
LOC_Os01g11530
OsAffx.10261.2.A1_at--330--4291Chr01:6206688..6207042 (25 bp)
CCTCATATGTCAGCGGAAGGGTGCT
LOC_Os01g11530
OsAffx.10261.2.A1_at--561--271Chr01:6206692..6207046 (25 bp)
ATATGTCAGCGGAAGGGTGCTCACC
LOC_Os01g11530
OsAffx.10261.2.A1_at--1010--751Chr01:6206694..6207048 (25 bp)
ATGTCAGCGGAAGGGTGCTCACCGA
LOC_Os01g11530
Target Sequence 
TATACAAAAAGATCCCTGAGGTTTCTAAGAATCAACCCGCCGACCTAGCCTCATATGTCAGCGGAAGGGTGCTCACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10261.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis