Browse Element(s) Details


OsAffx.10756.1.S1_x_at

Description gb:AB074005.1
DB_XREF= gi:16902307
GEN=AOX1c
TID=OsAffx.10756.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) mitochondrial AOX1c mRNA for alternative oxidase 1c, complete cds.
PROD=alternative oxidase 1c
FL= gb:AB074005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4720011/11transposon protein, putative, unclassified, expressed
LOC_Os05g393601/11transposon protein, putative, unclassified
LOC_Os04g467701/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein
LOC_Os02g47180Os.26575.1.S1_at8/112+28797042..28800123Cell division cycle protein 20 homolog, putative, expressed
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os02g47200OsAffx.10756.1.S1_x_at11/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47200OsAffx.8513.1.S1_s_at1/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47210Os.52569.1.S1_at11/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47210OsAffx.14178.1.S1_x_at1/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47220Os.12650.2.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47220Os.12650.1.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47230Os.49570.1.S1_at10/112+28820870..28827763expressed protein
LOC_Os02g47230Os.51461.1.S1_at1/112+28820870..28827763expressed protein
LOC_Os02g47240OsAffx.24762.1.S1_at11/112+28828065..28828475hypothetical protein
LOC_Os02g47250NANA2+28829205..28832269hypothetical protein
LOC_Os02g47260NANA2+28832951..28836242transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10756.1.S1_x_at--1080--9151Chr02:28807566..28807590 (25 bp)
TGCGCGTGCCCACTGACATCTTCTT
LOC_Os02g47200
OsAffx.10756.1.S1_x_at--806--4371Chr02:28807266..28807290 (25 bp)
CCAAGCCGAGGTGGTACGAGCGCGC
LOC_Os02g47200
OsAffx.10756.1.S1_x_at--225--2672Chr05:23004403..23004423 (21 bp)
AAGCCGAGGTGGTACGAGCGCGCGC
LOC_Os05g39360
OsAffx.10756.1.S1_x_at--362--3232Chr04:27511675..27511699 (25 bp)
CAAGATCGAGAACGTCCCCGCGCCG
LOC_Os04g46770
OsAffx.10756.1.S1_x_at--10--4031Chr02:28806982..28807001 (20 bp)
CGTCAACCACTTCGCGTCGGATGTT
LOC_Os02g47200
OsAffx.10756.1.S1_x_at--705--3231Chr02:28806884..28806998 (25 bp)
CAACCACTTCGCGTCGGATGTTCAT
LOC_Os02g47200
OsAffx.10756.1.S1_x_at--423--2651Chr02:28806883..28806997 (25 bp)
AACCACTTCGCGTCGGATGTTCATT
LOC_Os02g47200
OsAffx.10756.1.S1_x_at--538--1711Chr02:28806882..28806996 (25 bp)
ACCACTTCGCGTCGGATGTTCATTT
LOC_Os02g47200
OsAffx.10756.1.S1_x_at--928--2051Chr02:28806879..28806993 (25 bp)
ACTTCGCGTCGGATGTTCATTTTCA
LOC_Os02g47200
OsAffx.10756.1.S1_x_at--401--8571Chr02:28806849..28806873 (25 bp)
TGGATCTCAAGGATATCCCTGCCCC
LOC_Os02g47200
OsAffx.10756.1.S1_x_at--966--4191Chr02:28806827..28806851 (25 bp)
CCCGCTCGATTATCACTGAAGAAAT
LOC_Os02g47200
Target Sequence 
TGCGCGTGCCCACTGACATCTTCTTCCAGAGGAGGTACGGGTGCCGCGCGATGATGCTGGAGACGGTGGCGGCGGTGCCG
GGGATGGTGGGCGGCATGCTGCTGCACCTCCGGTCGCTCCGCCGCTTCGAGCACAGCGGCGGCTGGATCCGCGCGCTGCT
GGAGGAGGCCGAGAACGAGCGGATGCACCTCATGACCTTCATGGAGGTGGCCAAGCCGAGGTGGTACGAGCGCGCGCTCG
TGCTCGCCGTCCAGGGCGTCTTCTTCAACGCCTACTTCCTCGGCTACCTCCTGTCCCCCAAGCTCGCGCACCGCGTCGTC
GGCTACCTCGAGGAGGAGGCCATCCACTCCTACACCGAGTACCTCAAGGACATCGAGGCCGGCAAGATCGAGAACGTCCC
CGCGCCGCCGATCGCCATCGACTACTGGCGCCTCCCCGCCGGCGCCACGCTCAAGGACGTCGTCGTCGTCGTCCGCGCCG
ACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCGGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCC
CCGCTCGATTATCACTGAAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10756.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis