Browse Element(s) Details


OsAffx.11002.1.S1_at

Description tigr:9629.m01035
TID=OsAffx.11002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1081011/11Rho termination factor, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10729OsAffx.9946.1.S1_at4/111+5741029..5741364NA
LOC_Os01g10740OsAffx.22126.1.S1_at5/111+5745671..5746072hypothetical protein
LOC_Os01g10750Os.45990.2.S1_x_at8/111+5746869..5747237hypothetical protein
LOC_Os01g10760OsAffx.11001.1.S1_at11/111+5747505..5747837hypothetical protein
LOC_Os01g10770NANA1+5754293..5755409hypothetical protein
LOC_Os01g10780OsAffx.23193.1.S1_at11/111+5756620..5757036hypothetical protein
LOC_Os01g10790Os.1402.1.S1_at10/111+5757288..5761404WD-repeat protein 53, putative, expressed
LOC_Os01g10800Os.28976.1.S1_at11/111+5761454..5764704pentatricopeptide, putative, expressed
LOC_Os01g10810OsAffx.11002.1.S1_at11/111+5765013..5766263Rho termination factor, N-terminal domain containing protein, expressed
LOC_Os01g10820Os.1404.1.S1_at10/111+5766864..576907460S ribosomal protein L11, putative, expressed
LOC_Os01g10830Os.22640.1.A1_at11/111+5770102..5770992enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g10840Os.18766.1.S1_s_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.18766.1.S1_x_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.48021.1.S1_x_at2/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.52172.2.S1_x_at1/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11002.1.S1_at--361--5931Chr01:5765463..5765487 (25 bp)
GAGCATCAGGTCAGAAGCAAATGGA
LOC_Os01g10810
OsAffx.11002.1.S1_at--384--5391Chr01:5765476..5765500 (25 bp)
GAAGCAAATGGATCTCCGTTGCCAA
LOC_Os01g10810
OsAffx.11002.1.S1_at--676--2291Chr01:5765481..5765505 (25 bp)
AAATGGATCTCCGTTGCCAAGAACG
LOC_Os01g10810
OsAffx.11002.1.S1_at--364--4391Chr01:5765496..5765520 (25 bp)
GCCAAGAACGGTTAATAGGCGTAGC
LOC_Os01g10810
OsAffx.11002.1.S1_at--680--9991Chr01:5765517..5765541 (25 bp)
TAGCAAAGAAGAGCTCATTGAGTTC
LOC_Os01g10810
OsAffx.11002.1.S1_at--597--5911Chr01:5765527..5765551 (25 bp)
GAGCTCATTGAGTTCTTCAAAAGCA
LOC_Os01g10810
OsAffx.11002.1.S1_at--469--2351Chr01:5765546..5765570 (25 bp)
AAAGCATCCAGACCTCCATTGCCGA
LOC_Os01g10810
OsAffx.11002.1.S1_at--445--3811Chr01:5765559..5765583 (25 bp)
CTCCATTGCCGAGGAATCGCCAAGA
LOC_Os01g10810
OsAffx.11002.1.S1_at--333--4131Chr01:5765567..5765591 (25 bp)
CCGAGGAATCGCCAAGAACTTCGAG
LOC_Os01g10810
OsAffx.11002.1.S1_at--318--8191Chr01:5765639..5765847 (25 bp)
GGAAGCAGTCATACGCTAGGCATAG
LOC_Os01g10810
OsAffx.11002.1.S1_at--869--9591Chr01:5765647..5765855 (25 bp)
TCATACGCTAGGCATAGCTGATGTT
LOC_Os01g10810
Target Sequence 
GAGCATCAGGTCAGAAGCAAATGGATCTCCGTTGCCAAGAACGGTTAATAGGCGTAGCAAAGAAGAGCTCATTGAGTTCT
TCAAAAGCATCCAGACCTCCATTGCCGAGGAATCGCCAAGAACTTCGAGGAGGACGAGGAAGCAATCATCTGACCCGTTC
GAAGAGGTTGAGAGGAGGAAGCAGTCATACGCTAGGCATAGCTGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis