Browse Element(s) Details


OsAffx.11011.1.S1_at

Description tigr:9629.m01120
TID=OsAffx.11011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1164011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11580Os.37125.2.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11580OsAffx.23202.1.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11590Os.18774.1.S1_s_at11/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11590Os.43493.1.S1_at2/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11600NANA1+6254717..6255066hypothetical protein
LOC_Os01g11609NANA1+6258125..6258316NA
LOC_Os01g11620Os.43491.1.S1_x_at11/111+6264242..6267574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11011.1.S1_at--542--6131Chr01:6274310..6274334 (25 bp)
GAGGGTCGAAGTACCGTCCCATGGC
LOC_Os01g11640
OsAffx.11011.1.S1_at--950--5331Chr01:6274317..6274341 (25 bp)
GAAGTACCGTCCCATGGCACAAGGA
LOC_Os01g11640
OsAffx.11011.1.S1_at--161--1771Chr01:6274322..6274346 (25 bp)
ACCGTCCCATGGCACAAGGAAGGTG
LOC_Os01g11640
OsAffx.11011.1.S1_at--155--7531Chr01:6274344..6274368 (25 bp)
GTGGAAGCCACGAACATGCCGGAGA
LOC_Os01g11640
OsAffx.11011.1.S1_at--1066--2631Chr01:6274348..6274372 (25 bp)
AAGCCACGAACATGCCGGAGACGCT
LOC_Os01g11640
OsAffx.11011.1.S1_at--442--4291Chr01:6274387..6274411 (25 bp)
CCTTGAGGTCGGGCCCGATAAGGAT
LOC_Os01g11640
OsAffx.11011.1.S1_at--742--2911Chr01:6274406..6274430 (25 bp)
AAGGATGGCGGGAGCGCTGAAGCCA
LOC_Os01g11640
OsAffx.11011.1.S1_at--504--2651Chr01:6274425..6274449 (25 bp)
AAGCCAGAGCCAACGTAGGCGAAGG
LOC_Os01g11640
OsAffx.11011.1.S1_at--406--4371Chr01:6274434..6274458 (25 bp)
CCAACGTAGGCGAAGGGCGAAGCTT
LOC_Os01g11640
OsAffx.11011.1.S1_at--1145--5311Chr01:6274445..6274469 (25 bp)
GAAGGGCGAAGCTTGCCATCCCCAG
LOC_Os01g11640
OsAffx.11011.1.S1_at--273--5391Chr01:6274452..6274476 (25 bp)
GAAGCTTGCCATCCCCAGGACACAA
LOC_Os01g11640
Target Sequence 
GAGGGTCGAAGTACCGTCCCATGGCACAAGGAAGGTGGAAGCCACGAACATGCCGGAGACGCTCCTCTCCAGGGGGGCCT
TGAGGTCGGGCCCGATAAGGATGGCGGGAGCGCTGAAGCCAGAGCCAACGTAGGCGAAGGGCGAAGCTTGCCATCCCCAG
GACACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis