Browse Element(s) Details


OsAffx.11057.1.S1_x_at

Description gb:NM_187867.1
DB_XREF= gi:34902817
TID=OsAffx.11057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1489010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14860Os.9955.1.S1_a_at11/111+8326506..8330779Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os01g14870Os.5217.1.S1_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14870OsAffx.23250.2.S1_x_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14880Os.57.1.S1_at5/111+8335984..8336226hypothetical protein
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11057.1.S1_x_at--456--7991Chr01:8341715..8341739 (25 bp)
GGAGCGTTCTACTCCACCGTCGGGA
LOC_Os01g14890
OsAffx.11057.1.S1_x_at--897--1771Chr01:8341730..8341754 (25 bp)
ACCGTCGGGATGCTCCAGCTGTTCT
LOC_Os01g14890
OsAffx.11057.1.S1_x_at--333--631Chr01:8341739..8341763 (25 bp)
ATGCTCCAGCTGTTCTTGGACGAGA
LOC_Os01g14890
OsAffx.11057.1.S1_x_at--733--4011Chr01:8341830..8341952 (25 bp)
CGTCGCTAGTGTTCCTGGCGGTGTT
LOC_Os01g14890
OsAffx.11057.1.S1_x_at--375--10671Chr01:8341939..8341963 (25 bp)
TTCCTGGCGGTGTTCATCGAGGCGA
LOC_Os01g14890
OsAffx.11057.1.S1_x_at--909--9251Chr01:8342045..8342069 (25 bp)
TCCTCGACGGCACCTGGCTGGGCTT
LOC_Os01g14890
OsAffx.11057.1.S1_x_at--305--4511Chr01:8342107..8342128 (22 bp)
GCCGAGATCCCACTGATCAAGTTGT
LOC_Os01g14890
OsAffx.11057.1.S1_x_at--1140--2811NONE
AAGTTGTTCGACTGCTGGAGCTACC
NONE
OsAffx.11057.1.S1_x_at--724--8091Chr01:8342403..8342427 (25 bp)
GGACGACGACGTGCTACTTCGTGTA
LOC_Os01g14890
OsAffx.11057.1.S1_x_at--665--9891Chr01:8342417..8342441 (25 bp)
TACTTCGTGTACACGCCGTTCTTGG
LOC_Os01g14890
OsAffx.11057.1.S1_x_at--620--4031Chr01:8342433..8342457 (25 bp)
CGTTCTTGGCGAACCTGGCGAGATG
LOC_Os01g14890
Target Sequence 
GGAGCGTTCTACTCCACCGTCGGGATGCTCCAGCTGTTCTTGGACGAGAGGGTGTCGCCGCCGGCGGCGGCGGCGGGCGG
ATCGAAGGCCACCGGGAGCCCGCAGAAGACGGCGGCGTCGCTAGTGTTCCTGGCGGTGTTCATCGAGGCGAGCGCGGAGA
TGTACAGGGCGGGGGTGCCCAGCAACGTGGAGGCGTACGTGCTGTTCGCCGGCGCCGAGCTCGCGTGGCTGCTCCTCGAC
GGCACCTGGCTGGGCTTCGCCGTCGCGTGCCTCGTCGGCACCGCCTGCCCCCTCGCCGAGATCCCACTGATCAAGTTGTT
CGACTGCTGGAGCTACCCCAACGCCGACGTCCAGCTTCTTGGCGAGGGGATCGTGAGCTGGACGACGACGTGCTACTTCG
TGTACACGCCGTTCTTGGCGAACCTGGCGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11057.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis