Browse Element(s) Details


OsAffx.11058.1.S1_x_at

Description tigr:9629.m01478
TID=OsAffx.11058.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1497011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11058.1.S1_x_at--611--3771Chr01:8391696..8391720 (25 bp)
CTCTCGCCCATACGCCAGGAGGAGG
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--65--3471Chr01:8391735..8391759 (25 bp)
CAGGAGGAAGGTTGCGTCGACGAGG
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--71--8271Chr01:8391963..8391987 (25 bp)
GGCAGCACGGCGAACAGCGACTCCG
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--461--4531Chr01:8392002..8392026 (25 bp)
GCCGCCGAGAGGTCATCGGGCTTTT
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--311--491Chr01:8392038..8392062 (25 bp)
ATCTGGCCGTCGTCGCGGTCCAAGA
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--287--4671Chr01:8392052..8392076 (25 bp)
GCGGTCCAAGAAGACAGCAACGCTA
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--1037--4371Chr01:8392057..8392081 (25 bp)
CCAAGAAGACAGCAACGCTAGCGTT
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--676--1411Chr01:8392063..8392087 (25 bp)
AGACAGCAACGCTAGCGTTGCCCTG
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--370--4351Chr01:8392129..8392153 (25 bp)
CCACCTCGTCGGAGAGGTCGTCGGC
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--369--9951Chr01:8392188..8392212 (25 bp)
TACCGGCAGGGCCTCGTCCTCGGAT
LOC_Os01g14970
OsAffx.11058.1.S1_x_at--794--9411Chr01:8392201..8392225 (25 bp)
TCGTCCTCGGATGCCTCGGGTTCGG
LOC_Os01g14970
Target Sequence 
CTCTCGCCCATACGCCAGGAGGAGGCGGGCTTCGGGGAGCAGGAGGAAGGTTGCGTCGACGAGGGGGAGAGCGGCGGCCA
ACGGCCGCCGCCTCGCCGGGCCAGATCGGCGTCGCCGCCGCGGAGCCCGCATCTCGCCAAGATCGCCGAGCCCTCGGACT
CCTTCGCGTCGTCGTCGTCTTCCTCCACCTCCACCTCCTCCTCCTCCTCCTCCTCGTCCTCCGCCAAGAGCACTCGCCGG
CGGATATCGCTGCGTGACCTCCTCCTCGGCAGCACGGCGAACAGCGACTCCGCCACCGCCGCCGCCGCCGCCGAGAGGTC
ATCGGGCTTTTGGCCCCCGTCCATCTGGCCGTCGTCGCGGTCCAAGAAGACAGCAACGCTAGCGTTGCCCTGCCCGTGCC
CGTGCCCGCCGTCGCTGCAGCCGGCGCGGCGGTCCACCTCGTCGGAGAGGTCGTCGGCGCCGCCGCCGCGGCGGCGCGCG
ACGTCGCTGCCGTACCGGCAGGGCCTCGTCCTCGGATGCCTCGGGTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11058.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis